BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484499
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27160.1 | Symbols: GHS1 | Ribosomal protein S21 family prot... 1081 0.0
> AT3G27160.1 | Symbols: GHS1 | Ribosomal protein S21 family protein
| chr3:10017476-10019090 FORWARD LENGTH=843
Length=843
Score = 1081 bits (585), Expect = 0.0
Identities = 655/689 (95%), Gaps = 3/689 (0%)
Strand=Plus/Plus
Query 1 TTCTTCTTCTTCTTCCTCGCAACGCGTTAATGGCGGCTTCGTTCTCACTCACGAGCTTCA 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 27 TTCTTCTTCTTCTTCCTCGCGACGCGTTAATGGCGGCTTCGTTCTCACTCACGAGCTTCA 86
Query 61 TCTCCTTCATCTCACCATTCAAATCTCAAACCAAACCTACACCGCCACCAAACCTCACTC 120
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 87 TCTCCTTCATCTCACCATTCAAATCTCAAACTAAACCTACACCACCACCAAATCTCACTC 146
Query 121 TTCCTTCTCCAACAATCTCCCAAAGGCGAAGAAATGATCTCGCCATCGAATCAATGTCGG 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 147 TTCCTTCTCCAACAATCTCCCAAAGGCGAAGAAATGATCTCGCTATCGAATCAATGGCGG 206
Query 181 TCGAAGAGTCTTCTTCAACCGCTTCTTCAATTTCCTCTGAGATCGCCTCTGTGATTTGTC 240
||||||| |||| ||||||||||||||| ||||||||||| | || || ||||||||||
Sbjct 207 TCGAAGAAACTTCCTCAACCGCTTCTTCACTTTCCTCTGAGCTTGCTTCCGTGATTTGTC 266
Query 241 CCTCGCTTGCTTACTCGAACACGCTCTTCTTCAGTTCTGGATACAACGTGCAAGTGTTTG 300
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 267 CCTCGCTTGCTTACTCCAACACACTCTTCTTCAGTTCTGGATACAATGTGCAAGTGTTTG 326
Query 301 TCGAAGATAATGAGTCAGAGGAGAGGCTTGTGAATCGATTTAGAAGAGAAGTGATGAGAA 360
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 327 TTGAAGATAATGAGTCAGAGGAGAGGCTTGTGAATCGATTTAGGAGAGAAGTGATGAGAA 386
Query 361 CTGGTGTTATACAGGAATGTAAGAGAAGGAGATACTTTGAGAATAAACAAGATGAGAAGA 420
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 387 CTGGTGTTATACAGGAATGTAAGAGGAGAAGATACTTTGAGAATAAACAAGATGAGAAGA 446
Query 421 AACGTAGGACTCGTGATGCTGCTAAGCGTAATAAGAAAAGGCGTCCTCAAGCAAGGTTTA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 AACGTAGGACTCGTGATGCTGCTAAGCGTAATAAGAAAAGGCGTCCTCAAGCAAGGTTTA 506
Query 481 CTCAAGAAACAAGGGAAGAAGCAGCAGCAGCAGCAACTAAGAGTAAGAAAAAGGATGAGG 540
||||||||||||| |||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 507 CTCAAGAAACAAGAGAAGAAGCAGCAGCAGCA--A-CTAAGAGTAAGAAAAAAGATGAGG 563
Query 541 AAGAAGACAACTGGGAGATGCCTGGTGGAGATGTACCTTCTTGAAACACGATTTCAGTAA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 564 AAGAAGACAACTGGGAGATGCCTGGTGGAGATGTACCTTCTTGAAACACGATTTTAGTAT 623
Query 601 ATATAATCTCCGGCCTTTTGGTTAAATTTCGTATTATCCCGTTTTTATTACTTGTTACAT 660
||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 624 ATAAAATCTCCGGTCTTTTGATTAAATTTCGTATTATCCCGTTTTTATTACTTGGTACAT 683
Query 661 TGTAAGTTGGAAATGCGTTTACTGCATAT 689
||| ||||||||||| |||||||||||||
Sbjct 684 TGTGAGTTGGAAATGTGTTTACTGCATAT 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33355473608
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5