BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484504
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1099 0.0
> AT3G27210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G40860.1);
Has 133 Blast hits to 98 proteins in 25 species:
Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7; Plants -
70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
| chr3:10045186-10047343 REVERSE LENGTH=1098
Length=1098
Score = 1099 bits (595), Expect = 0.0
Identities = 798/887 (90%), Gaps = 49/887 (6%)
Strand=Plus/Plus
Query 28 tcgatctcg-ttgatcataattgctcaatcaaaactctctctctatctct-aaaaggttt 85
||||||||| |||||||||||| ||||||| ||| | | ||| | ||||| |||||||||
Sbjct 25 TCGATCTCGTTTGATCATAATTTCTCAATC-AAA-T-T-TCT-T-TCTCTAAAAAGGTTT 78
Query 86 ttctctttttaactttgttttgattatttata-taatctttGCCTATGAATGGGTTCGTC 144
| |||||| ||| ||| ||||||||| ||||| ||| | |||||||||||||||||
Sbjct 79 TGCTCTTTATAAATTTATTTTGATTACTTATATTAA----T--CTATGAATGGGTTCGTC 132
Query 145 -T--TCGTCGTCGCTTAATAATTCTCCGATTAGAGTTGATAGCATGGTAACTCCAGAATC 201
| ||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 133 TTCGTCGTCGTCGCTTAATAACTCTCCGATTAGAGCTGATAGTATGGTAACTCCAGAATC 192
Query 202 TCCGATGACTGTGAAGGATAACAAAAACGACAACGTTTCGATCATGTCTCCTTC---CAA 258
|| |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 193 TCAGATGACTGTGAACGATAACAAAAACGACAACGTTTCGATCTTGTCTCCTTCTGTCAA 252
Query 259 GAAAAGTTTTGAATCGCCAAGGAAGAGTACTTCGATTCCGGAGGTTTCTCCGACGACGGC 318
|||||| |||||||||||||||||||||| | || | || | | | ||||
Sbjct 253 GAAAAGCTTTGAATCGCCAAGGAAGAGTA---C--TT-C-GA----T-T----C--CGGC 294
Query 319 GAATAATAATCTCACTCCGGTCAAATCTCGGTGGTCTTTTTCTTCATCCAAGAAAAGTTT 378
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 295 GAATAATAATCTCACTCCGGTCAAATCTCGGTGGTCTTTCTCTTCATCCAAGAAAAGTTT 354
Query 379 TGGAAGTAAAGATGAAACCTTTTTCGATTCGCAGCCATGGCTACAATCTGATTCCGATGA 438
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 355 CGGAAGCAAAGATGAAACCTTTTTCGATTCGCAGCCATGGCTACAATCTGACTCCGACGA 414
Query 439 TGATTTCCACAGCGTAAATGGCGATTTCACTCCATCACTCGGAAACACTCCTAAGAGCAG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TGATTTCCACAGCGTAAATGGCGATTTCACTCCATCACTCGGAAACACTCCTAAGAGCAG 474
Query 499 CTTCTCAGATAGGCCACCACGTTTCCACAACCTTATATTCCACGAGAGGAAGTCTTCCCG 558
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 475 CTTCTCAGATAGGCCACCACGTTTCCACAACCTTATATTCCACGAGAAGAAGCCTTCCCG 534
Query 559 AGGCTCGTCTTCTCCAGCACCACTTCCAAGAAGGAAGAAGCTTGGTGAGCTATTCAGAGA 618
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 535 AGGCTCGTCTTCTCCAGCGCCACTTCCAAGGAGGAAGAAGCTTGGTGAGCTTTTCAGAGA 594
Query 619 CAGTATAAGAGAAGAACGAGAAGAAAGCTCTGAAGGCGGTTCATCCTCAGCTATAAGCAC 678
|||||||||||||||||||||||||||| | | |||||| ||||||||||||||
Sbjct 595 CAGTATAAGAGAAGAACGAGAAGAAAGC---G--G----TTCATCGTCAGCTATAAGCAC 645
Query 679 TCCTTATCTCTCTGGTGCTAACTCAGGAGAATTCAACGACAACGCCATCGAGAAGGAAGA 738
||||||||| || |||||||||||| | |||||||| |||| ||||||||| ||||||||
Sbjct 646 TCCTTATCTATCAGGTGCTAACTCACGCGAATTCAATGACACCGCCATCGAAAAGGAAGA 705
Query 739 GAAGAAGAAGTCTAATTGGCAGCATCATCGTTGTCTTCCTGGATTCTCTTCATGTGGTGG 798
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 706 GAAGAAGAAGTCTAACTGGCATCATCATCGTTGTCTTCCTGGTTTCTCTTCATGTGGTGG 765
Query 799 AAGTTTCATGGAGAGGAGGAAGAAGATGAGCTCTGAAACTCCGGTTGTTGCTTTGAAATG 858
|||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 766 AAGTTTCATGGAGAGGAGGAAGAAGATGAGTTCTGAAACTCCAGTTGTTGCTGTGAAATG 825
Query 859 AAATGTAGAGAATCTTGAAATTTGGAAATGTTTTGTATATGAAAGAA 905
| ||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 826 AGATGTAGAGATTAT-GAAATTTGGAAATGTTTTGTATATGAAAGAA 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44206049360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5