BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484507 Length=1143 Score E Sequences producing significant alignments: (Bits) Value AT3G27250.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1531 0.0 > AT3G27250.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40800.1); Has 104 Blast hits to 104 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10061545-10062731 FORWARD LENGTH=1187 Length=1187 Score = 1531 bits (829), Expect = 0.0 Identities = 1081/1193 (91%), Gaps = 56/1193 (5%) Strand=Plus/Plus Query 1 AGACACACagaaagactatagagaaagagagagaaagaaagaaagaaaagagtgagagag 60 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| Sbjct 1 AGACACACAGAAAGACTATAGAGAAAGAGAGAGAAAGAAAGAAAGAAAA-A--GAGTGAG 57 Query 61 agtgtttgat-a-agagagagaaagat-aaaaaTGGATCAAGATGAGTGGTTGGGAACGC 117 |||||||||| | | |||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 58 AGTGTTTGATGATA-AGAGAGAAAGATAAAAAATGGATCAAGATGACTGGTTGGGAACGC 116 Query 118 TAAGATA---C------GCGCAGGATAAAGTTTCCGTCGACGCTCTCATGCTCCGGTACC 168 ||||||| | |||||||||||||||||||| |||||||||||||||||||||| Sbjct 117 TAAGATACGCCGGTAAGGCGCAGGATAAAGTTTCCGTTGACGCTCTCATGCTCCGGTACC 176 Query 169 GTCCCATCGCTCCGAAGCCGACGACTGGTCAGTCATGTGGTGTAGG-AGATAACAACAAC 227 |||| |||||||| |||||||||||||||||| |||||||||| || ||||||||||||| Sbjct 177 GTCCGATCGCTCCAAAGCCGACGACTGGTCAGCCATGTGGTGT-GGCAGATAACAACAAC 235 Query 228 AACAACTTATACGGTATGAGCAAACGAACCAAACGAAAGTACGTTAGGGTTTCGAAGAAT 287 || | || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 AATAGCTCATACGGTATGAGCAAACGAACCAAACGAAAGTACGTTAGGGTTTCGAAGAAT 295 Query 288 AATAAAGGCACGTGTCGAGGTAAGAGCAGATCTGACTTGTCTGATGATCGGGAACAAACT 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 AATAAAGGCACGTGTCGAGGTAAGAGCAGATCTGACTTGTCTGATGATCGGGAACAAACT 355 Query 348 GAAGTCGTGACGTTGCAACTCTTGCCGGAAAAATCAGATATTTCCGGTGAGTACTCGCCG 407 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 GATGTCGTGACGTTGCAACTCTTGCCGGAAAAATCAGATATTTCCGGTGAGTACTCGCCG 415 Query 408 TTGGATCAGGATAGTCTCGATCCATCGGTGAAAACGATAATCGGAGAGGAAACACAAGAA 467 |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 416 TTGGATCAAGATAGTCTCGATCCGTCGGTGAAATCGATAATCGGAGAGGAAACACAAGAA 475 Query 468 ACCAACATGTGGGGTACGTTTAACGGCGGCGTCACGGCGGATATGGAGACGTGGGTTACG 527 ||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||| ||| Sbjct 476 ACCAACACGTGGGGTATGTTTAACGGCAGCGTCACGGCGGAGATGGAGACGTGGGTGACG 535 Query 528 GTGGAGTCTGTCACAAGTGTTTGTGATGGTATTTTGAGTTCCCATGCGGTGGGGTTTACG 587 |||||||| |||||||| || ||||| |||| |||||||||||||||||||||| ||||| Sbjct 536 GTGGAGTCCGTCACAAGCGTGTGTGAGGGTAGTTTGAGTTCCCATGCGGTGGGGATTACG 595 Query 588 GACGTTGAGATCGTTGATAATCTTGGTAAGGACACGTGTCCAGCGTTCGTATCGGATGGT 647 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 GACGTTGAGATCGTTGATAATCTTGGTAAGGACACGTGTCCAGCGTTCGTATCGGATGGC 655 Query 648 TCGAACCGTGTGGTGTGGGTCAACGAGGCTTACCGGAGGAATGTTTCCGGTGATGATTCA 707 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 656 TCGAACCGTGTGGTGTGGGTCAACGAGGCTTACCGGAGAAATGTTTCCGGTGATGATTCA 715 Query 708 ACGTCG---GTGTCCCCGGATGTCGTGGTGTGGTTGGTGGCGGAGGAGGCAACGGCGGCG 764 ||| || || || ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 716 ACGGCGTCAGTATCGCCGGAAGTTGTGGTGTGGTTGGTGGCGGAGGAGGCAACGGCGGCG 775 Query 765 ATGCATTGTAACTACCAAGCTTTCACGTGTAGGGTGAGGATGCAATACACGTGGAAGGAA 824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 ATGCATTGTAACTACCAAGCTTTCACGTGTAGGGTGAGGATGCAATACACGTGGAAGGAA 835 Query 825 ACAAAGTATACAAAAACGGTGCCGTGTGATGTGTGGAAAATGGAGTTTGGTGGCTTTGCA 884 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 836 ACAAAGTATACCAAAACGGTGCCGTGTGATGTGTGGAAAATGGAGTTTGGTGGTTTTGCA 895 Query 885 TGGAGGCTAGACACAACAACTGCTCTGACTCTCTGGCTTTGATGGTGATTGCTGCGAG-A 943 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | Sbjct 896 TGGAGGCTAGACACAACAGCTGCTCTGACTCTCTGGCTTTGATGGTGATTGCTGCAAGTA 955 Query 944 CACATGAGGGTAAGATTACCAAGCTATGTGATTTTAGAGTGTGTCTAATG-CAACTTT-G 1001 ||||| |||||||||| ||| ||||||||||||| ||||| ||||| ||| || | Sbjct 956 -ACATGCGGGTAAGATTGTTAAGATATGTGATTTTAGTGTGTGACTAATCACAAAATTAG 1014 Query 1002 T--T---T--A-G---A-CT------AG-----TAAGAAGGAAACAAATGATGCTAATGT 1038 | | | | | | || || |||||||||| |||||||||||||||| Sbjct 1015 TAATCGCTTCAAGCGCAACTTTGTTTAGACGAGTAAGAAGGAAGCAAATGATGCTAATGT 1074 Query 1039 TGGAAGAAGTATGGAAAAGCTGGAAAGCTTAAATATATAC--C-----GTAATAATGTCA 1091 || ||||||| |||| ||| |||||||||||||||||| | |||||||||||| Sbjct 1075 TGAAAGAAGTGTGGAGGAGCCGGAAAGCTTAAATATATAGAACATATAGTAATAATGTCA 1134 Query 1092 TATATTTATTGGCAAAGACTAAATAAAAG-ATGCCATTGTATGGTTTCGTACC 1143 ||| ||||||||||||||||||| |||| |||||||||||||||||| |||| Sbjct 1135 TATTTTTATTGGCAAAGACTAAACAAAAATATGCCATTGTATGGTTTCATACC 1187 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56074008765 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5