BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484572 Length=763 Score E Sequences producing significant alignments: (Bits) Value AT3G27830.1 | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A... 1070 0.0 AT3G27850.1 | Symbols: RPL12-C | ribosomal protein L12-C | chr3... 691 0.0 > AT3G27830.1 | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A | chr3:10318505-10319432 FORWARD LENGTH=928 Length=928 Score = 1070 bits (579), Expect = 0.0 Identities = 722/787 (92%), Gaps = 26/787 (3%) Strand=Plus/Plus Query 1 AATGGCGTCGACGACTCTCTCAATCGCAACCACAATCCGTTCTTCATCTTATCCTACTCT 60 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 71 AATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCATCTTATCCTACTCT 130 Query 61 CGCTTCCACCAACCACTTCCCTTCCCGAACCACCACCATCGAATTCCCCTCTCGCTTCGG 120 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 131 CGCTTCCATCAATCACTTCCCTTCCCGAACCACCACCATCGAATTCCCCTCTCGCTTCGG 190 Query 121 TGGTGCTTCATCTTCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCGCCGT 180 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 191 TGGTGGTTCATCATCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCGCCGT 250 Query 181 CGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCATCCCTTACCCTCGAAGA 240 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 251 CGAAGCTCCGGAGAAAATCGAGAAGATCGGATCCGAAATCTCATCCCTAACCCTCGAAGA 310 Query 241 AGCTCGTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCTCCCCACTCTCTTTAGC 300 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 311 AGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCTTTAGC 370 Query 301 TCCTGCTGCTGCGGCTGTAGCTGCTCCAGCCGACGGTGGTGCGGCGGCTGTAGTTGAAGA 360 || || || ||||| || |||||||||||||||||||| |||||||||||||| || || Sbjct 371 CCCCGCAGCAGCGGCGGTTGCTGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGA 430 Query 361 ACAGACCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTGAT 420 || || || ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 431 GCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAAT 490 Query 421 TAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATTGAAGG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 491 TAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATCGAAGG 550 Query 481 ATTGCCCaagaagtttaaagaaggtgtgactaaagatgaagctgaagaagctaagaagac 540 ||| || |||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 551 ATTACCAAAGAAGTTTAAAGAAGGTATCACTAAAGATGAAGCTGAAGAAGCTAAGAAGAC 610 Query 541 tcttgaagaagCTGGTGCTAAAGTCTCCATTGCTTAAGGTTTT-ATAATAAAA------G 593 ||||||||||||||||||||||||||||||||||||||||||| |||| |||| | Sbjct 611 TCTTGAAGAAGCTGGTGCTAAAGTCTCCATTGCTTAAGGTTTTTATAAAAAAAAAAAAAG 670 Query 594 ---TTCTTCTCTTTTCTGGAAATT--TCGGGATCTTTTGTGTTGTTTAGTATAGTTTGCG 648 || || |||||||||||| || | || |||||||||||||||||||||||||||| Sbjct 671 AAGTTGTTATCTTTTCTGGAATTTGATTGG--TCTTTTGTGTTGTTTAGTATAGTTTGCG 728 Query 649 TCTGGAATTGTTG-----T------AATTTGAATCACATTTGGTTTCCCATAAGCTGATT 697 ||||||||||||| | |||||||||||||||||||||||||| |||||||| Sbjct 729 TCTGGAATTGTTGAGAAATTGTTGTAATTTGAATCACATTTGGTTTCCCATTAGCTGATT 788 Query 698 TTGCCATTGACATGAGCTTTT-GGTAGATGCACATAACATGTTTGTTGAAATGCCTAAAT 756 | |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 789 TCGCCATTGATGTGAGCTTTTTGGTAGCTGCACATAACATGTTTGTTGAAATGCCTAAAT 848 Query 757 GAGACAA 763 ||| ||| Sbjct 849 GAGGCAA 855 > AT3G27850.1 | Symbols: RPL12-C | ribosomal protein L12-C | chr3:10324839-10325713 FORWARD LENGTH=875 Length=875 Score = 691 bits (374), Expect = 0.0 Identities = 520/587 (89%), Gaps = 23/587 (4%) Strand=Plus/Plus Query 1 AATGGCGTCGACGACTCTCTCAATCGCAACCACAATCCGTTCTTCATCTTATCCT-AC-T 58 |||||||||||||||||||||||||||||| ||||||||||| || ||| | || || | Sbjct 66 AATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCT-CTCACTT 124 Query 59 CTCGCTTCCAC-CAACCACTTCCCTTCCCGAA-CCACCACCATCGAATTCCCCTCTCGCT 116 | ||||||||| | | ||||| |||| || || ||||| | ||||||||||| | ||| Sbjct 125 C-CGCTTCCACTC-ATCACTT-CCTTTCCAAACCCACCGCAATCGAATTCCCATTTCG-- 179 Query 117 TCGGTGGTGCTTCATCTTCCACATTGACCCACCGTGCAACCCATCTCCGTCCAATCGCCG 176 || | || || |||| | | | ||||||||||| | | |||||||| ||| ||| Sbjct 180 TC--T-CAGC-TCTTCTT---C--T-AGCCACCGTGCAATCAACCTCCGTCCTATCTCCG 229 Query 177 CCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCATCCCTT-ACCCTC 235 |||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| Sbjct 230 CCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCCT-CCTTAACCCTC 288 Query 236 GAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCTCCCCACTCTCT 295 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 289 GAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCC 348 Query 296 TTAGCTCCTGCTGCTGCGGCTGTAGCTGCTCCAGCCGACGGTGGTGCGGCGGCTGTAGTT 355 ||||| || || || ||||| || || ||||||||||||||||| |||||||||||||| Sbjct 349 TTAGCCCCCGCAGCAGCGGCCGTTGCAGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTG 408 Query 356 GAAGAACAGACCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCA 415 || || || || || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 GAGGAGCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCA 468 Query 416 GTGATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATT 475 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 GTAATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATC 528 Query 476 GAAGGATTGCCCaagaagtttaaagaaggtgtgactaaagatgaagctgaagaagctaag 535 |||||||| || |||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 529 GAAGGATTACCAAAGAAGTTTAAAGAAGGTATCACTAAAGATGAAGCTGAAGAAGCTAAG 588 Query 536 aagactcttgaagaagCTGGTGCTAAAGTCTCCATTGCTTAAGGTTT 582 ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 589 AAGACTCTTGAAGAAGCTGGTGCTAAAGTCTCCATTGCTTAAG-TTT 634 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37072800486 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5