BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484575 Length=833 Score E Sequences producing significant alignments: (Bits) Value AT3G27850.1 | Symbols: RPL12-C | ribosomal protein L12-C | chr3... 1170 0.0 AT3G27830.1 | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A... 798 0.0 > AT3G27850.1 | Symbols: RPL12-C | ribosomal protein L12-C | chr3:10324839-10325713 FORWARD LENGTH=875 Length=875 Score = 1170 bits (633), Expect = 0.0 Identities = 784/852 (92%), Gaps = 29/852 (3%) Strand=Plus/Plus Query 1 ACTCACAGAGACACACAAAACAAATCCCAAAGATTC------AG-A-AAGAAGAGAGTGA 52 |||||||||||||||||||||||||||||||| ||| || | ||||||||||||| Sbjct 1 ACTCACAGAGACACACAAAACAAATCCCAAAGCTTCAGAGGAAGAAGAAGAAGAGAGTGA 60 Query 53 AACAACAATGGCGTCGACGACTGTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCTCT 112 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 61 GA-AACAATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCTTCTCCTCT 119 Query 113 CACTTCCGCTACCACCCATCACTTCCCTTCCAAACCCACCGCAATCGAATTCCCATTTCG 172 |||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 120 CACTTCCGCTTCCACTCATCACTTCCTTTCCAAACCCACCGCAATCGAATTCCCATTTCG 179 Query 173 TCTC-G--GTTCTTCTAGCCACCGTGCAATCAACCTCCGTCCAATCGCCGCCGTCGAAGC 229 |||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 180 TCTCAGCTCTTCTTCTAGCCACCGTGCAATCAACCTCCGTCCTATCTCCGCCGTCGAAGC 239 Query 230 TCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCATCCCTT-ACCCTCGAAGAGGCTC 288 |||||||||||||||||||||||||||||||||||| | |||| ||||||||||| |||| Sbjct 240 TCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCCT-CCTTAACCCTCGAAGAAGCTC 298 Query 289 GTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCTCCCCACTCTCTTTAGCCCCTG 348 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | Sbjct 299 GTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCTCCCCACTCTCCTTAGCCCCCG 358 Query 349 CTGCAGCGGCTGTTGCAGCTCCGGCAGACGGTGGCGCGGCGGCTGTAGTGGAGGAACAGA 408 | |||||||| ||||||||||| || ||||||||||||||||||||||||||||| || | Sbjct 359 CAGCAGCGGCCGTTGCAGCTCCAGCCGACGGTGGCGCGGCGGCTGTAGTGGAGGAGCAAA 418 Query 409 CCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTGATTAAAG 468 | || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 419 CAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTTCTCGTATTGCAGTAATTAAAG 478 Query 469 CTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATTGAAGGATTAC 528 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 479 CTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTAATCGAAGGATTAC 538 Query 529 CCaagaagtttaaagaaggtgtgactaaagatgaagctgaagaagctaagaagacccttg 588 | |||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| Sbjct 539 CAAAGAAGTTTAAAGAAGGTATCACTAAAGATGAAGCTGAAGAAGCTAAGAAGACTCTTG 598 Query 589 aagaagCTGGTGCTAAAGTTTCCATTGCTTAAGTTTCTTCAACAATCG-ATAAAAA---- 643 ||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| Sbjct 599 AAGAAGCTGGTGCTAAAGTCTCCATTGCTTAAGTTTCTTCAACAATCGGAAAAAAAAAAA 658 Query 644 TGTGATCTTTTTCGGAATTTATGAATCTTTTTGTGTTGTTTAGTATAGTTTGTGTTTG-G 702 |||||| |||| |||||||||||| ||||||||| | ||||||||||||||||||||| | Sbjct 659 TGTGATATTTT-CGGAATTTATGAGTCTTTTTGT-T-GTTTAGTATAGTTTGTGTTTGAG 715 Query 703 TATTGTTGATTCAGCTTT-GAGAATTTGTTGTACTTTGAATCAATTTGGTTTCGTATTTA 761 | | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | Sbjct 716 T-TA-TTGATTCAGCTTTTGAGAAATTGTTGTACTTTGAATCAATTTGGTTTCGTATT-A 772 Query 762 CGGATTTT-GTCTTCAACAAGTTCTTCGTTTAGATGCACATAACGTGTTTGTTAAAATGC 820 | | |||| |||||||||||||||||| | |||||||||||||| |||||||| |||||| Sbjct 773 CAG-TTTTAGTCTTCAACAAGTTCTTCCTCTAGATGCACATAACCTGTTTGTTGAAATGC 831 Query 821 CTAGCTCAAAAA 832 |||||||||||| Sbjct 832 CTAGCTCAAAAA 843 > AT3G27830.1 | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A | chr3:10318505-10319432 FORWARD LENGTH=928 Length=928 Score = 798 bits (432), Expect = 0.0 Identities = 692/809 (86%), Gaps = 52/809 (6%) Strand=Plus/Plus Query 46 AGAGTGAAACAACAATGGCGTCGACGACTGTCTCAATCGCAACAACAATCCGTTCCTCTT 105 |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 58 AGAGTGAAACAAAAATGGCGTCGACGACTCTCTCAATCGCAACAACAATCCGTTCCTCAT 117 Query 106 CTCCT-CTCACTTC-CGCTACCACCCATCACTTCCCTT-CCAAACCCACCGCAATCGAAT 162 || | || || || |||| ||| | |||||||||||| || || ||||| | ||||||| Sbjct 118 CTTATCCT-AC-TCTCGCTTCCATCAATCACTTCCCTTCCCGAA-CCACCACCATCGAAT 174 Query 163 TCCCATTTCG--TC--T--CGGTTC-T--T---C--T-AGCCACCGTGCAATCAACCTCC 207 |||| | ||| || | ||||| | | | | | ||||||||||| | | |||| Sbjct 175 TCCCCTCTCGCTTCGGTGGTGGTTCATCATCCACATTGACCCACCGTGCAACCCATCTCC 234 Query 208 GTCCAATCGCCGCCGTCGAAGCTCCGGAGAAAATCGAGAAAATCGGATCCGAAATCTCAT 267 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 235 GTCCAATCGCCGCCGTCGAAGCTCCGGAGAAAATCGAGAAGATCGGATCCGAAATCTCAT 294 Query 268 CCCTTACCCTCGAAGAGGCTCGTATCCTCGTCGACTATCTCCAAGACAAGTTCGGTGTCT 327 |||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 295 CCCTAACCCTCGAAGAAGCTCGTATCCTCGTCGACTATCTCCAAGACAAATTCGGTGTCT 354 Query 328 CCCCACTCTCTTTAGCCCCTGCTGCAGCGGCTGTTGCAGCTCCGGCAGACGGTGGCGCGG 387 ||||||||||||||||||| || |||||||| ||||| ||||| || ||||||||||||| Sbjct 355 CCCCACTCTCTTTAGCCCCCGCAGCAGCGGCGGTTGCTGCTCCAGCCGACGGTGGCGCGG 414 Query 388 CGGCTGTAGTGGAGGAACAGACCGAATTCGATGTGGTTATCAATGAAGTTCCGAGTAGTT 447 |||||||||||||||| || || || |||||||||||||||||||||||||||||||||| Sbjct 415 CGGCTGTAGTGGAGGAGCAAACAGAGTTCGATGTGGTTATCAATGAAGTTCCGAGTAGTT 474 Query 448 CTCGTATTGCAGTGATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTA 507 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 CTCGTATTGCAGTAATTAAAGCTGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTA 534 Query 508 AGGAGCTAATTGAAGGATTACCCaagaagtttaaagaaggtgtgactaaagatgaagctg 567 |||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||| Sbjct 535 AGGAGCTAATCGAAGGATTACCAAAGAAGTTTAAAGAAGGTATCACTAAAGATGAAGCTG 594 Query 568 aagaagctaagaagacccttgaagaagCTGGTGCTAAAGTTTCCATTGCTTAAG-TTTCT 626 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| | Sbjct 595 AAGAAGCTAAGAAGACTCTTGAAGAAGCTGGTGCTAAAGTCTCCATTGCTTAAGGTTTTT 654 Query 627 -TCAACAATCGATAAA-AA-T-GTGATCTTTT-TCGGAATTT-AT-GAATCTTTTTGTGT 679 | || || | ||| || | || ||||||| | ||||||| || | |||||| |||| Sbjct 655 ATAAAAAAAAAA-AAAGAAGTTGTTATCTTTTCT-GGAATTTGATTGG-TCTTTT-GTGT 710 Query 680 TGTTTAGTATAGTTTGTGTTTGGTATTGTTGATTCAGCTTTGAGAATTTGTTGTACTTTG 739 |||||||||||||||| || ||| |||||||| | | |||| |||||| |||| Sbjct 711 TGTTTAGTATAGTTTGCGTCTGGAATTGTTGA----G-----A-AATT-GTTGTAATTTG 759 Query 740 AATCA-ATTTGGTTTCGTATTTA-CGGATTTTGTC-TTCAACA-AG-TTCTTCGTTTAGA 794 ||||| |||||||||| ||| | | ||||| | | || | || || || || || Sbjct 760 AATCACATTTGGTTTCCCATT-AGCTGATTTCGCCATTGATGTGAGCTTTTTGGT--AGC 816 Query 795 TGCACATAACGTGTTTGTTAAAATGCCTA 823 |||||||||| |||||||| ||||||||| Sbjct 817 TGCACATAACATGTTTGTTGAAATGCCTA 845 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40589190776 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5