BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484584
Length=2355
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27960.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3365 0.0
> AT3G27960.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:10380380-10383092 REVERSE LENGTH=2409
Length=2409
Score = 3365 bits (1822), Expect = 0.0
Identities = 2200/2376 (93%), Gaps = 51/2376 (2%)
Strand=Plus/Plus
Query 1 AAAACATATAAGGACAGTGAAAGGGTTTGTTCATAAATGTTTGTTGCTTCATCTTTCTCA 60
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 16 AAAACATATAAGGACAGTGAAAGGGTTTGTGCATAAATG-TTGTTGCTTCATCTTTCTC- 73
Query 61 TTATAGAGAATATATATTAGCTATGAGATTATGAAAGTGAAGATATACAAACGAACACCT 120
||| | |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 74 ---------ATA-ACATTAGCTATGAGATTATGAAAGTGAAGATATA-AAACAAACACCT 122
Query 121 AAAAGTGAAAAGTACAAGACACCAAATCCTTCAtttttttCTCTTACACAAACCACACTA 180
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 123 AAAAGTGAAAAGTACAAGACACCAAATCCTTCATTTTCATCTCTTACAC-AACCACACTA 181
Query 181 AGTTACCAAAAAACAGAATCTGTTCTGTTTTTTGCCTTCTTGCAGATTTCTTCAGAGTCA 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 182 AGTTACCAAAAAACAGAATCTGTTCT-TTTTTTGCCTTCTTGCAGATTTCTTCAGAGTCA 240
Query 241 GAGAGAGACAAACA--TA-AAGGTTCGA-TTTTTATCTCTT-AACGGCCATGGACGTAGG 295
||| | | ||| | || || || || || | | | || | |||||||||||||||
Sbjct 241 AAGACACATAAAGATTTATAA--TT-GAGTTGTGA-GTTTTGGA-GGCCATGGACGTAGG 295
Query 296 AGAGAGCAATGAGAGGGGAAAAGACGATTCTGCCCTTCAAGCTTCTCCGAGGAGTCCTCT 355
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 296 AGAGAGCAATGAGAGGGTAAAAGACGATTCTGCCCTTCAAGCTTCACCGAGGAGTCCTCT 355
Query 356 GAGCTCTATAGATCTTGCAATTGATGGAGCTATGAATGCTTCTATTGAGCAGTTGTATCA 415
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGTTCTATAGATCTTGCAATTGATGGAGCTATGAATGCTTCTATTGAGCAGTTGTATCA 415
Query 416 TAACGTTTGTGAAATGGAGAGTTCTGATGATCAGTCTCCGTCGAGGGCGAGTTTTATTTC 475
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 416 TAACGTTTGTGAAATGGAGAGTTCTGATGATCAGTCTCCGTCCAGGGCGAGTTTTATTTC 475
Query 476 GTATGGAGCTGAATCTAGGATTGATTTGGAGTTGAGGCATTTGGTTggagatgtgggagg 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 476 GTATGGAGCTGAATCTAGGATTGATTTGGAGTTGAGGCATTTGGTTGGAGATGTAGGAGA 535
Query 536 agaaggagagaggaagaaagagattatcttggagaagaaggaagagagtattggaggagg 595
|||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 536 AGAAGGAGAGAGCAAGAAAGAGATTATCTTGGAGAAGAAGGAAGAAAGTAATGGAGAAGG 595
Query 596 TAGCTTGAGTCAGAAGAAACCT-GTT-GAATCTCTTTCGAATGG-T---AAGAA-G-GTT 647
|||||||||||||||||||||| || ||| | | ||| || | || || | | |
Sbjct 596 TAGCTTGAGTCAGAAGAAACCTCTTTCGAA--TGGTAAGAA-GGTTGCGAA-AACGAG-T 650
Query 648 GCGAA-AA--CGAAGATTCTTGGTTCGAGGATCTCTTCGAGGAAATCGCCGGATTTGGGG 704
| || || ||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 651 CCTAATAATCCGAAGATGCCGGGTTCGAGGATCTCTTCGAGGAAATCACCGGATTTGGGG 710
Query 705 AAGGTTTATGTGGATGAGGAGAGTCCTGAGCTTGGGGTGTTGTTGTTGAAGCAAGCCAGA 764
||||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 711 AAGGTTTCTGTTGATGAGGAGAGTCCTGAGCTTGGTGTGGTGTTGTTGAAGCAAGCCAGA 770
Query 765 GAGTTGGTTTCTTCTGGTGAGAATCTGAATAAGGCTCTTGATTTGGCGTTGAGAGCGGTG 824
|||||||||||||| ||||||||| | || |||||||||||||| |||||||||||||||
Sbjct 771 GAGTTGGTTTCTTCAGGTGAGAATTTAAACAAGGCTCTTGATTTAGCGTTGAGAGCGGTG 830
Query 825 AAAGTGTTTGAGAAATGTGGGGAAGGAGAGAAACAATTTGGGTTGAATTTGGTGATGTCT 884
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 831 AAAGTGTTTGAGAAATGTGGGGAAGGAGAGAAACAACTTGGGTTGAATTTGGTGATGTCT 890
Query 885 TTGCATATCTTGGCAGCGATATATGCGGGGTTAGGGAGATACAATGATGCGGTGCCTGTT 944
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 891 TTGCATATCTTGGCAGCGATATATGCAGGGTTAGGGAGATACAATGACGCTGTGCCTGTT 950
Query 945 CTTGAGCGTTCTATTGAGATACCGATGATTGAAGATGGGGAGGATCACGCGTTGGCGAAA 1004
||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 951 CTTGAACGTTCTATCGAGATACCGATGATTGAAGATGGTGAGGATCACGCGTTGGCGAAA 1010
Query 1005 TTTGCAGGGTGTATGCAGCTTGGTGACATGTATGGTTTGATGGGTCAGGTGGAAAATTCG 1064
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1011 TTTGCAGGGTGTATGCAGCTTGGTGACATGTATGGTTTGATGGGTCAAGTTGAAAATTCG 1070
Query 1065 ATTTTGCTATATACAGCGGGATTGGAGATCCAAAGACAAGTTCTTGGAGAATCGGATGCA 1124
||| ||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1071 ATTATGCTATACACCGCGGGTTTGGAGATTCAAAGACAAGTTCTTGGAGAATCGGATGCA 1130
Query 1125 CGAGTTGGAGAGACTTGTAGGTACTTAGCTGAAGCTCATGTTCAAGCAATGCAGTTTGAA 1184
|||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1131 CGAGTTGGCGAAACTTGTAGGTACTTAGCGGAAGCTCATGTTCAAGCAATGCAGTTTGAA 1190
Query 1185 GAAGCCTCGAGGCTTTGTCAAATGGCGTTGGACATTCACAAAGAAAACGGGGCTGCCACT 1244
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct 1191 GAAGCCTCAAGGCTTTGTCAAATGGCATTGGACATTCACAAAGAAAACGGTGCTGCCGCT 1250
Query 1245 ACGGCTTCGATTGAAGAAGCTGCGGATAGAAAACTCATGGGACTTATCTGCGATGCGAAG 1304
|| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1251 ACAGCTTCTATTGAAGAAGCTGCGGATAGAAAACTGATGGGACTTATCTGCGATGCGAAA 1310
Query 1305 GGAGATTACGAGGTTGCGCTGGAGCATTATGTTTTGGCAAGCATGGCAATGTCATCTCAG 1364
|| ||||| || |||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 1311 GGTGATTATGAAGTTGCGCTTGAGCATTATGTTTTAGCGAGCATGGCAATGTCATCTCAG 1370
Query 1365 AACCAAAGAGAAGATGTTGCCT-CTGTAGATTGCAGTATTGGTGATGCTTACATGTCGCT 1423
||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1371 AACCATAGAGAAGATGTTG-CTGCTGTAGATTGCAGTATTGGTGATGCTTACATGTCGCT 1429
Query 1424 AGCTCGGTTTGATGAAGCGATATTCGCATATCAGAAGGCTTTGGCTGTGTTTAAGCAAGC 1483
|||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1430 AGCTAGGTTTGATGAAGCGATATTCGCATACCAGAAGGCTTTAGCTGTGTTTAAGCAAGG 1489
Query 1484 CAAAGGTGAGACTCATTCCTCTGTTGCTTTGGTTTACGTCAGGCTTGCTGACTTGTACAA 1543
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1490 AAAAGGTGAGACTCATTCCTCTGTTGCTTTGGTTTACGTTAGGCTTGCTGACTTGTACAA 1549
Query 1544 CAAGATTGGGAAATTACGCGATTCCAAATCGTACTGCGAAAACGCTCTTAAGATTTACCT 1603
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1550 CAAGATTGGGAAAACACGCGATTCCAAATCGTACTGCGAAAACGCTCTCAAGATTTACCT 1609
Query 1604 AAAACCGAGTCCGGGAACTCCTATGGAAGAGGTTGCCACGGGTTTTATAGAGATTTCTGC 1663
|||||||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1610 AAAACCGACTCCAGGAACTCCTATGGAAGAGGTTGCGACTGGTTTTATAGAGATTTCTGC 1669
Query 1664 GATATATCAGTCGATGAACGAACTTGATCAATCTCTTAAGTTGTTGAAG-CGGGCGTTGA 1722
|||||||||||| ||||| |||||||||||| |||||||||||||| || ||||||||||
Sbjct 1670 GATATATCAGTCAATGAATGAACTTGATCAAGCTCTTAAGTTGTTG-AGACGGGCGTTGA 1728
Query 1723 AGATATATGCAAACGCTCCAGGTCAACAGAACACGATTGCAGGTATTGAAGCTCAAATGG 1782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 AGATATATGCAAACGCTCCAGGTCAACAGAACACGATTGCAGGTATTGAAGCTCAAATGG 1788
Query 1783 GTGTGATTTCTTACATGATGGGTAATTACCCCGAGTCCTACAACATATTCAAGAGCGCGA 1842
||||| || |||| |||||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct 1789 GTGTGGTTACTTATATGATGGGAAATTACTCCGAGTCCTACGACATATTCAAGAGCGCGA 1848
Query 1843 TATCAAAGTTCCGCAACAGCGGAGAGaaaaaaaCAGCTCTTTTTGGGATTGCTCTGAATC 1902
|||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct 1849 TATCAAAGTTCCGCAATAGCGGAGAGAAAAAAACCGCTCTTTTCGGGATTGCTTTGAATC 1908
Query 1903 AGATGGGACTAGCTTGCGTTCAGCGTTATGCGATCAATGAAGCTGCAGATTTGTTCGAAG 1962
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1909 AGATGGGACTAGCTTGCGTTCAGCGTTACGCGATCAATGAAGCTGCAGATTTGTTTGAAG 1968
Query 1963 AAGCAAAAACCATTCTCGAGAAAGAGTATGGACCGTACCATCCCGATACATTAGCAGTAT 2022
|||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||| || |
Sbjct 1969 AAGCGAAAACTATTCTTGAGAAAGAGTGTGGACCGTACCATCCCGATACATTAGCGGTTT 2028
Query 2023 ACAGTAACCTCGCCGGAACATACGACGCAATGGGAAGGTTAGATGATGCTATAGAGATAT 2082
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 ACAGTAACCTTGCTGGAACGTACGACGCAATGGGAAGGTTAGATGATGCTATAGAGATAT 2088
Query 2083 TGGAGTATGTTGTTGGGACAAGAGAAGAGAAGCTCGGGACGGCAAATCCCGAGGTTGAGG 2142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2089 TGGAGTATGTTGTTGGGACAAGAGAAGAGAAGCTCGGGACGGCAAATCCCGAGGTTGAGG 2148
Query 2143 ACGAGAAACAGAGGCTTGCTGCGTTGTTAAAAGAAGCTGGAAGAGGAAGGAGTAAAAGAA 2202
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2149 ACGAGAAGCAGAGGCTTGCTGCGTTGTTGAAAGAAGCTGGAAGAGGAAGGAGTAAAAGAA 2208
Query 2203 ACAGAGCACTTCTTACTCTTTTGGACAAAAACCCTGAAATTGCAAATGGACAGAGACCGG 2262
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2209 ACAGAGCACTTCTTACCCTTTTGGACAACAACCCTGAAATTGCAAATGGACAGAGACCGG 2268
Query 2263 TTTATTGATGAACCGGATTACGGTCCGGT-TAAAATGTATATATATACGATATACGAA-T 2320
||||||||| |||||||||| ||||||| |||||||||||||||||| | |||| || |
Sbjct 2269 TTTATTGATTAACCGGATTATTGTCCGGTCTAAAATGTATATATATACAAAATAC-AAGT 2327
Query 2321 TC-AGCTACGGTACTTTACACGGTCGAGAGAGAAGG 2355
|| | |||||||||| ||||||||||| |||||||
Sbjct 2328 TCGAA-TACGGTACTT-ACACGGTCGAGGGAGAAGG 2361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116917069305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5