BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484590
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28050.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 2122 0.0
> AT3G28050.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr3:10442814-10445398 FORWARD LENGTH=1456
Length=1456
Score = 2122 bits (1149), Expect = 0.0
Identities = 1271/1329 (96%), Gaps = 12/1329 (1%)
Strand=Plus/Plus
Query 54 CTCTGTTTCTCTCATCTTAAAATTCATGTaaaaaaaatctacaaatcaaagaga-aaaca 112
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 89 CTCTGTTTCTCTCATCTTAAAATTCATGTAAAAAAAATCTACAAATCAAAGAGAGAAACA 148
Query 113 gagtaaagag-aa-agaagaagatggcgcgaaaaTACTTTCAGGGAGAAGTTTTGCCGGT 170
|||||||||| || |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 149 GAGTAAAGAGAAAGAGAAGAAGATGGCGCGGAAATACTTTCAGAGAGAAGTTTTGCCGGT 208
Query 171 AACGGCGTTAGTGATAATGGAATGTGCAAACGTTGGTTTAAACACTCTGTTTAAAGCAGC 230
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 AACGGCTTTGGTAATAATGGAATGTGCAAACGTTGGTTTAAACACTCTGTTTAAAGCAGC 268
Query 231 AACTTTGAAAGGCATGAGCTTTCATGTCTTCATCGTTTACTCTTATGGTCTCGCTGCTCT 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 AACTTTGAAAGGCATGAGCTTTCATGTCTTCATCGTTTACTCTTATGGTCTCGCTGCTCT 328
Query 291 GCTTCTTCTTCCTTCTCTGTTTTGCTCTTTCAGATCAAGAACTCTTCCACCGATGAATTT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 GCTTCTTCTTCCTTCTCTGTTTTGCTCTTTCAGATCAAGAACTCTTCCACCGATGAATTT 388
Query 351 CTCAATTCTCTACAAAATTGTGCTTTTAGGGATTATTGGATGCTGCTCAAACATAATGGG 410
||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 389 CTCTATTCTCTACAAAATCGTGCTCTTAGGGATTATTGGATGCTGTTCAAACATAATGGG 448
Query 411 GTACACAGGGATAAATTATAGTTCTCCAACACTTGCTTCTGCAATCAGCAACCTCACTCC 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 ATACACAGGGATAAATTATAGTTCTCCAACACTTGCTTCTGCAATCAGCAACCTCACTCC 508
Query 471 TGCTTTCACCTTCTTGCTCGCCGTCGTTTTCAGGATGGAGAGTGTGTCTTTCAAGAGAAC 530
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 509 TGCTTTCACCTTCTTGCTTGCAGTCGTTTTCAGGATGGAGAGTGTGTCTTTTAAGAGAAC 568
Query 531 AAGTAGTGTAGCTAAAATGTTAGGAACCGTTGTTTCCATTGGAGGTGCATTTATAGTGAC 590
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 569 AAGTAGTGTGGCTAAAATGTTAGGAACCGTTGTTTCTATTGGAGGTGCATTTATAGTGAC 628
Query 591 TCTTTATAATGGTCCTGTTGTGATTGCTACATCACCACCGTCTGTTTCTTTGCGATCGCA 650
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 629 TCTTTATAATGGTCCTGTTGTGATTGCTAAATCGCCACCGTCTGTTTCTTTGCGATCGCA 688
Query 651 ATCGACTAACCCTAATTGGATACTTGGTGCGGCTTTCCTTTCGGTCGAGTATTTCTGTCT 710
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct 689 ATCGACTAACCCTAATTGGATACTTGGTGCGGGTTTCCTTGCGGTCGAGTATTTCTGTGT 748
Query 711 TCCATTGTGGTACATTGTTCAGACTCAAATCATGAGAGAGTATCCGGCCGAGTTTACCGT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TCCATTGTGGTACATTGTTCAGACTCAAATCATGAGAGAGTATCCGGCCGAGTTTACCGT 808
Query 771 TGTTTGCTTTTATAGCATAGGTGTTAGCTTTTGGACCGCGCTCGTCACATTGTTCACTGA 830
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 809 TGTTTGCTTTTATAGCATAGGCGTTAGCTTTTGGACCGCGCTAGTCACATTGTTCACTGA 868
Query 831 AGGGAGTGACTTGGGTGCATGGAAGATAAAACCGAATATAGCTTTAGTGTCGATCGTTTG 890
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 AGGGAATGACTTGGGTGCATGGAAGATAAAACCGAATATAGCTTTAGTGTCGATCGTTTG 928
Query 891 CTCGGGATTCTTTGGATCTTGCATAAACAATACTATTCACACGTGGGCATTGCGGATCAA 950
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 929 CTCGGGATTGTTTGGATCTTGCATAAACAATACTATCCACACGTGGGCATTGCGGATCAA 988
Query 951 GGGGCCTTTATTTGTTGCAATGTTCAAGCCATTGTCGATTGCGATTGCCGTTGCAATGGG 1010
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 989 GGGGCCTTTATTTGTTGCAATGTTCAAGCCATTGTCTATTGCAATTGCTGTTGCAATGGG 1048
Query 1011 CGTTATCTTCCTTCGGGATTCTCTCTATATCGGCAGCTTGATCGGGGCAACGGTAATAAC 1070
||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1049 AGTTATCTTCCTGCGAGATTCTCTCTACATCGGCAGCTTGATCGGGGCAACGGTAATAAC 1108
Query 1071 AATCGGGTTTTACACGGTGATGTGGGGCAAAGCCAAGGAAGTGGCCTTGGTCGAAGATGA 1130
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1109 AATCGGGTTTTACACGGTAATGTGGGGAAAAGCCAAGGAAGTGGCCTTGGTCGAAGATGA 1168
Query 1131 CAACAAGGCTAACCACGAGGAGGCCAATGAAGCTGACCTTGATTCTCCATCAAGTTCACA 1190
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1169 TAACAAGGCTAACCACGAGGAGGCCAATGAAGCTGACCTTGATTCTCCATCGGGTTCACA 1228
Query 1191 GAAGGCTCCTCTCTTGGAAACTTACAAGAACGATGAACATGTCTGAGTATCATCAACTAG 1250
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1229 GAAGGCTCCTCTCTTGGAAAGTTACAAGAACGATGAACATGTATGAGTATCATCAACTAG 1288
Query 1251 TGAAGATCACGCtatatatatatatatatatGTGTGGAAATTTCATATGTGAATTGTCTT 1310
||||||||||||||||||||||| | ||| ||||| |||||||||||||||||
Sbjct 1289 TGAAGATCACGCTATATATATATGT------GTGAAAAAATT-CATATGTGAATTGTCTT 1341
Query 1311 TGTAATTTATTTGACGAGACAAATGTGATCTTCAATTTTAGGAATC-ATGTGTTTTCTAA 1369
|||||||||||||| ||||||||||||||||| |||||||||| || | |||||||||||
Sbjct 1342 TGTAATTTATTTGATGAGACAAATGTGATCTTTAATTTTAGGA-TCCAAGTGTTTTCTAA 1400
Query 1370 TCACAATCT 1378
|||||||||
Sbjct 1401 TCACAATCT 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67871136840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5