BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484604 Length=1306 Score E Sequences producing significant alignments: (Bits) Value AT3G28220.1 | Symbols: | TRAF-like family protein | chr3:10524... 1827 0.0 > AT3G28220.1 | Symbols: | TRAF-like family protein | chr3:10524404-10526728 FORWARD LENGTH=1360 Length=1360 Score = 1827 bits (989), Expect = 0.0 Identities = 1180/1269 (93%), Gaps = 25/1269 (2%) Strand=Plus/Plus Query 3 ACTTAACCAAACATGTTTGAAAAGGGGTTGATaaaaaaaGAAGAAAACAAGTTTCAAGAG 62 |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| Sbjct 5 ACTTAACCAAACATGTCTGAAAAGGGGTTGATAAAAAAAGAAGACCACATGTTTCAAGAG 64 Query 63 GAGAAGAGAAAGACAAACTATGGAGCAATTTGCTTGGTTTGCTTCTTTTGTTTCTTT-TT 121 |||||||||||||||||||||||||||||| |||||| ||||||| ||| || ||| || Sbjct 65 GAGAAGAGAAAGACAAACTATGGAGCAATTGGCTTGGCTTGCTTCATTT-CTTGTTTCTT 123 Query 122 TGCATTCCAATTCATGAAACTTGTGACAACACAACCTT---TAACAACAACATCATCCAT 178 ||||||||||||||||||| | || ||||||||||||| |||||||||||||||||| Sbjct 124 TGCATTCCAATTCATGAAAATCGTAACAACACAACCTTCAACAACAACAACATCATCCAT 183 Query 179 TTCCGTTATCGATAGCCCAATGTCCTCCCATAAACTCTCTGATAGGAGAGAATTATGGAG 238 | ||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| Sbjct 184 TGCCGTTATCGATAGCCCAATGTCCTCCCATAAGCTATCTGATAGGAGAGAAATATGGAG 243 Query 239 AGTTAGT-CCACCTTCTACCTATTGTCTCAAAATCGAATCTTTCAGAAAATTCGCCACTT 297 ||||| | ||||| ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 244 AGTTA-TCCCACCATCTACCTATTGTCTCAAAATCGAATCTTTCATAAAATTCGCCACTT 302 Query 298 CTCCAAACGCCGAGAAGTACGAATCCCGTGCTTTTCAATCCGGTGGATACAACTGGACAC 357 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 303 CTCCAAACGCCGAGAAGTACGAATCCCGTCCTTTTGAATCCGGTGGATACAACTGGACAC 362 Query 358 TTATTGTCTATCCTAAAGGAAACATTAAGGAAGGAGCTCCAGGTGATTGGGTTTCAATGT 417 ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| Sbjct 363 TTATTGTCTATCCTAAAGGAAACATTAAGGAAGGAGCTCCACTTAATTACGTTTCAATGT 422 Query 418 ATGTCCAAATAGACAATTCAACACTCCTTAACTCTCCAAAAGAAGTTTACGCAGAAGTCA 477 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 ACGTCCAAATAGACAATTCAACACTCCTTAACTCTCCAAAAGAAGTTTACGCAGAAGTCA 482 Query 478 AATTCTTCATTTATAACCGGAAAGAGGACAAGTACTTCACATATCAAGAGACGGATGCAA 537 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 483 AATTCTTCATTTATAACCGGAAAGAGGACAAGTACTTAACATATCAAGAGACGGATGCAA 542 Query 538 AGCGCTTTTTTCTGTTCAAACCATATTGGGGATATGGTAACGTTAGATCCTACGGCGACG 597 | |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| Sbjct 543 AACGCTTTTTTCTGTTCAAACCATATTGGGGATATGGTAATGTTAGACCCTACACCGACG 602 Query 598 TGGCGAATCCCGATGCTGGTTGGCTTTTCGACGGTGACAATGTTTTATTCGGTGTCGACG 657 |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 603 TGGCTAATCCCAATGCTGGTTGGCTTTTCGACGGTGACAATGTTTTATTCGGTGTGGACG 662 Query 658 TTTTTGTCACTGAAGTTTTTAACAAATGGGAAGTATTCTCCTTCACTAAGAGTTTGCATA 717 | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 663 TATTTGTCACTGAAGTTTTTAACAAATGGGAAGTGTTCTCATTCACTAAGAGTTTGCATG 722 Query 718 ACCGCCTTTACAAATGGACGTTAACCAATTTCTCGTCACTAGAGAAACAATACTATGTAT 777 ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | Sbjct 723 ACCGCCTTTACAAATGGACGTTACCCAATTTCTCGTCACTAGAGAAACAGTACTATGTCT 782 Query 778 CTGACAAGTTCGTGATCGGTGGGAGAAGCTGGGCTTTGAAAGTGTATCCAAGTGGCGATG 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 CTGACAAGTTCGTGATCGGTGGGAGAAGCTGGGCTTTGAAAGTGTATCCAAGTGGCGATG 842 Query 838 GAGAAGGACAGGGTAACTCGCTGTCGCTATATGTTGTTGCGGTTGATGTTAAGCCGTACG 897 | |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | Sbjct 843 GCGAAGGACAGGGTAACTCGTTGTCGTTATATGTTGTTGCGGTTGATGTTAAGCCGTATG 902 Query 898 ACAAGATTTACCTAAAAGCTAAGCTACGAATTATAAACCAGAGAGATTCTAAACATGTGG 957 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 903 ACAAGATTTACCTAAAAGCTAAGCTACGGATTATAAACCAGAGAGATTCTAAACACATGG 962 Query 958 AGAAGAAAGTCGAAAGCTGGTCGGATCAAGCAAACAGTTGGGGATTCCAGAAGTTTGTAC 1017 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 AGAAGAAAGTTGAAAGCTGGTCGGATCAAGCAAACAGTTGGGGATTCCAGAAGTTTGTAC 1022 Query 1018 CATTTGCTGATCTTCAGGATACTTCTAAAGGTCTTCTTGTGAATGATACATTGAAGATAG 1077 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1023 CATTTGCTGATCTTAAGGATACTTCTAAAGGTCTTCTTGTGAATGATACATTGAAGATGG 1082 Query 1078 AGATTGAATTTGAAGATTTCTCTAACACAAAATACTTTCCAAGTTAAGTTTTGCATTATG 1137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1083 AGATTGAATTTGAAGATTTCTCTAACACAAAATACTTTCCAAGTTAAGTTTTGCAT-A-- 1139 Query 1138 ATTGCTCAACCA-A-AG-TCACA-CTCG-TTGCGTTTT-TCTTTTTAAGTGTTTTTGTGA 1191 || || ||||| | || | | | | ||| ||| | | |||||||||||||||||| Sbjct 1140 AT-GCAAAACCAGAGAGCTTGGAAC-CAATTGTGTTCTGT-TTTTTAAGTGTTTTTGTG- 1195 Query 1192 C-AATAATTGGAGGATTGGTCTTCCTAAGGTTTAGGAGCCTATATATCTCCCACTTTTCA 1250 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1196 CTAATAATTGGAGGATTGGTCTTCCTAAGGTTTAGGAGCCTAT----CTCCCACTTTTCC 1251 Query 1251 TTATTCCCT 1259 ||||||| Sbjct 1252 CAATTCCCT 1260 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64256697600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5