BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484645 Length=1398 Score E Sequences producing significant alignments: (Bits) Value AT3G28710.1 | Symbols: | ATPase, V0/A0 complex, subunit C/D | ... 2065 0.0 AT3G28715.1 | Symbols: | ATPase, V0/A0 complex, subunit C/D | ... 1766 0.0 > AT3G28710.1 | Symbols: | ATPase, V0/A0 complex, subunit C/D | chr3:10772903-10775727 REVERSE LENGTH=1430 Length=1430 Score = 2065 bits (1118), Expect = 0.0 Identities = 1327/1423 (93%), Gaps = 34/1423 (2%) Strand=Plus/Plus Query 1 AAACAAATCCAATCAATTCGAAGCTATCTTCTTCTTCGCGTCGATCTCTGTATCGATTTC 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 14 AAACAAATCCAATCAATTCGAAGCTATCTTCTTCTTCGCGTTGATCTCTGTATCGATTTC 73 Query 61 TTCTTCAGATCTCTC-ACGACAATCTTTGAGATCTGAATAATCCTACGATCAGGAGGA-A 118 ||||||||||||| | |||||||| ||||||||||||| ||| |||| | |||| || | Sbjct 74 TTCTTCAGATCTC-CGGCGACAATCATTGAGATCTGAAT-ATCTTACGTTAAGGA-GAGA 130 Query 119 AATATGTACGGATTCGAGGCGCTTACCTTCAACATCCATGGCGGATACTTGGAGGCGATC 178 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 131 AAGATGTACGGATTCGAGGCGCTTACCTTCAACATCCATGGCGGATATTTGGAGGCGATC 190 Query 179 GTCAGAGGTCACCGTGCTGGTCTTCTCACCACCGCCGATTACAATAATCTATCTCAGTGT 238 || ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 191 GTTAGAGGCCACCGTGCTGGGCTTCTCACCACCGCCGATTACAATAATCTATGTCAGTGT 250 Query 239 GAGAACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTTCTTACCTCCAA 298 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 251 GAGAACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGCTCTTATCTCCAA 310 Query 299 AACGAACCGTCACCTCTGCATACCACCACCATTGTGGAGAAGTGTACGCTCAAGCTTGTT 358 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 311 AACGAACCGTCACCTCTGCATACCACCACCATTGTGGAGAAGTGTACTCTTAAGCTTGTT 370 Query 359 GATGACTACAAGCATATGCTTTGTCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTAC 418 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 371 GATGACTACAAGCATATGCTTTGCCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTAC 430 Query 419 ATCAGATATGGCCATATGATCGACAATGTCGTGCTCATTGTTACTGGAACCCTGCACGAG 478 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 431 ATCAGATATGGCCACATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTGCATGAG 490 Query 479 AGAGATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCT 538 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 491 AGAGATGTTCAAGAGTTGATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCT 550 Query 539 ACACTAGCAGTTGCGCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACTCCT 598 |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| Sbjct 551 ACACTAGCAGTTGCTCAGAACATGCGGGAACTCTACCGGTTGGTGCTTGTGGATACTCCT 610 Query 599 CTGGCTCCATACTTTTCTGAATGCTTAACATCAGAGGATCTCGATGACATGAACATAGAG 658 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 611 TTGGCTCCATACTTTTCTGAATGCTTAACGTCAGAGGATCTCGATGACATGAACATAGAG 670 Query 659 ATTATGAGGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAA 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 671 ATTATGAGGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAA 730 Query 719 CTTGGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTAGCCTTTGAGGCCGATAGAAGA 778 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 731 CTTGGTGGCGCAACAGCGGAGATTATGTCTGACCTTTTGGCCTTTGAGGCCGATAGAAGA 790 Query 779 GCAGTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAA 838 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 791 GCAGTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGAAAGAAA 850 Query 839 TTGTACTCTAACTTTGGTCTGCTCTATCCGTATGGCCACGAGGAGCTTGCTATCTGCGAG 898 ||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||| Sbjct 851 CTGTACTCTAACTTTGGTCTACTCTATCCATATGGTCACGAAGAGCTTGCTATCTGCGAG 910 Query 899 GATATAGATCAGGTTCGTGGTGTAATGGAGAAATACCCTCCATATCAAGCTATATTCTCC 958 |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 911 GATATAGACCAGGTTCGTGGTGTTATGGAGAAATATCCTCCGTATCAAGCTATATTCTCG 970 Query 959 AAGATGTCTTATGGAGAGAGCCAGATGCTTGACAAGGCATTTTATGAAGAAGAAGTCCGA 1018 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || Sbjct 971 AAGATGTCTTATGGAGAGAGCCAGATGCTCGACAAAGCATTTTATGAAGAAGAAGTCAGA 1030 Query 1019 AGGCTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCCGTATTCTTTGCGTATATGAGG 1078 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1031 AGGCTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCGGTATTCTTTGCGTATATGAGG 1090 Query 1079 TTGAGAGAGCAGGAAATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAACCAG 1138 || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1091 TTAAGAGAGCAGGAGATCAGGAACCTTATGTGGATATCTGAATGTGTTGCACAGAACCAG 1150 Query 1139 AAGTCCAGAATCCACGACAGTGTCGTCTACATGTTCTGAGTGTGGTAA-GAAGTCAAAAA 1197 |||||||| |||||||||||||||||||||||||||||| | |||| || |||||||| Sbjct 1151 AAGTCCAGGATCCACGACAGTGTCGTCTACATGTTCTGATTCTGGTGGTGA-GTCAAAAA 1209 Query 1198 CACATAAACAAATGTGAAATCT-GAGTCTGGTT--CT-CAT-G-T----A----CAATCG 1243 |||||||||||||||||||||| |||||||||| || ||| | | | |||||| Sbjct 1210 CACATAAACAAATGTGAAATCTTGAGTCTGGTTTTCTTCATCGCTCCTCATGTACAATCG 1269 Query 1244 TTGGTTTT-ACATTCCCTGTTTCTGTCGCTCTGCATTTTACCAG--TGCGTGTATTGAGT 1300 |||||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||| Sbjct 1270 TTGGTTTTTACATTCCCTGTTTCTGTCGCTCTGTGTTT-ACCAGAGTGCGTGTATTGAGT 1328 Query 1301 AT-TCCCCAATAAGAATCTCTCC-ATTTGTTTGTTTGTTGTTGGCCATAT--TCTTG-AT 1355 || |||| ||||||||||||| ||||||||||||||||||||||||| ||||| | Sbjct 1329 ATCTCCC-AATAAGAATCTCTTTTATTTGTTTGTTTGTTGTTGGCCATACACTCTTGTAA 1387 Query 1356 TGATACTCTTTTTATATATGATGCATACGAATTACTTTCGCGG 1398 ||| | ||| || ||||||||||||||||||||||||||| Sbjct 1388 -GAT-CAAATTT-ATTTATGATGCATACGAATTACTTTCGCGG 1427 > AT3G28715.1 | Symbols: | ATPase, V0/A0 complex, subunit C/D | chr3:10777849-10780633 FORWARD LENGTH=1515 Length=1515 Score = 1766 bits (956), Expect = 0.0 Identities = 1073/1130 (95%), Gaps = 6/1130 (1%) Strand=Plus/Plus Query 65 TCAGATCTCTC-ACGACAATCTTTGAGATCTG-AATAATCCTACGATCAGGAGGA-AAAT 121 ||||||||| | ||| ||||||||||||||| ||| || ||| ||||||| || ||| Sbjct 120 TCAGATCTC-CGGCGATAATCTTTGAGATCTGAAAT-TTCTTACAATCAGGA-GAGAAAG 176 Query 122 ATGTACGGATTCGAGGCGCTTACCTTCAACATCCATGGCGGATACTTGGAGGCGATCGTC 181 ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| Sbjct 177 ATGTACGGATTCGAGGCGCTTACGTTCAATATCCATGGGGGATACTTGGAGGCGATCGTC 236 Query 182 AGAGGTCACCGTGCTGGTCTTCTCACCACCGCCGATTACAATAATCTATCTCAGTGTGAG 241 ||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| Sbjct 237 AGAGGCCACCGTGCTGGGCTTCTCACCACCGCCGATTACAACAATCTATGTCAGTGTGAG 296 Query 242 AACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTTCTTACCTCCAAAAC 301 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 297 AACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTCCTTACCTCCAAAAC 356 Query 302 GAACCGTCACCTCTGCATACCACCACCATTGTGGAGAAGTGTACGCTCAAGCTTGTTGAT 361 ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 357 GAACCATCACCTCTGCATACCACTACAATTGTGGAGAAGTGTACGCTCAAGCTTGTTGAT 416 Query 362 GACTACAAGCATATGCTTTGTCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTACATC 421 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 417 GACTACAAGCATATGCTTTGCCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTACATC 476 Query 422 AGATATGGCCATATGATCGACAATGTCGTGCTCATTGTTACTGGAACCCTGCACGAGAGA 481 |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 477 AGATATGGTCATATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTTCACGAGAGA 536 Query 482 GATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCTACA 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCTACA 596 Query 542 CTAGCAGTTGCGCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACTCCTCTG 601 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 CTAGCTGTTGCTCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACTCCTCTG 656 Query 602 GCTCCATACTTTTCTGAATGCTTAACATCAGAGGATCTCGATGACATGAACATAGAGATT 661 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 657 GCTCCATACTTTTCTGAATGCCTAACATCAGAGGATCTCGATGACATGAACATAGAGATT 716 Query 662 ATGAGGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAACTT 721 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 717 ATGAGGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAACTTCTGTCAGAAACTT 776 Query 722 GGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTAGCCTTTGAGGCCGATAGAAGAGCA 781 ||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||| Sbjct 777 GGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTGGCCTTTGAAGCCGACAGGAGAGCA 836 Query 782 GTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAATTG 841 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 837 GTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAACTG 896 Query 842 TACTCTAACTTTGGTCTGCTCTATCCGTATGGCCACGAGGAGCTTGCTATCTGCGAGGAT 901 ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || || Sbjct 897 TACTCCAACTTTGGTCTCCTCTATCCATATGGCCACGAGGAGCTTGCTATCTGTGAAGAC 956 Query 902 ATAGATCAGGTTCGTGGTGTAATGGAGAAATACCCTCCATATCAAGCTATATTCTCCAAG 961 |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| Sbjct 957 ATAGATCAGGTTCGTGGTGTTATGGAAAAATACCCTCCGTATCAAGCTATATTCTCCAAG 1016 Query 962 ATGTCTTATGGAGAGAGCCAGATGCTTGACAAGGCATTTTATGAAGAAGAAGTCCGAAGG 1021 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 1017 ATGTCTTATGGAGAAAGCCAGATGCTCGACAAGGCATTTTATGAAGAAGAAGTCAGAAGG 1076 Query 1022 CTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCCGTATTCTTTGCGTATATGAGGTTG 1081 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1077 CTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCGGTATTCTTTGCGTATATGAGGTTG 1136 Query 1082 AGAGAGCAGGAAATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAACCAGAAG 1141 | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 CGGGAGCAGGAGATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAACCAGAAG 1196 Query 1142 TCCAGAATCCACGACAGTGTCGTCTACATGTTCTGAGTGTGGTAAGAAGT 1191 ||||| |||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 1197 TCCAGGATCCACGATAGTGTGGTCTACATGTTCTGAGTCTGGTAAGAAGT 1246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68875147740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5