BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484647
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28715.1 | Symbols: | ATPase, V0/A0 complex, subunit C/D | ... 1923 0.0
AT3G28710.1 | Symbols: | ATPase, V0/A0 complex, subunit C/D | ... 1724 0.0
> AT3G28715.1 | Symbols: | ATPase, V0/A0 complex, subunit C/D
| chr3:10777849-10780633 FORWARD LENGTH=1515
Length=1515
Score = 1923 bits (1041), Expect = 0.0
Identities = 1158/1213 (95%), Gaps = 13/1213 (1%)
Strand=Plus/Plus
Query 1 TTCAAAGTTATCTTCTTCTTCGCGATCGCAA--------TC---TT-TTCTTCTTCTTCA 48
||||||||||||||||||||||||||| ||| || || |||||||||||||
Sbjct 51 TTCAAAGTTATCTTCTTCTTCGCGATCACAATCTCTGCTTCGATTTCTTCTTCTTCTTCA 110
Query 49 GAATTCAGATCAGATCTCCGGCGACAATCTTTGAGATCTG-AATATCTTACAATCAGGAG 107
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 111 GAATTCAGATCAGATCTCCGGCGATAATCTTTGAGATCTGAAATTTCTTACAATCAGGAG 170
Query 108 AGAAAGATGTACGGATTCGAGGCGCTTACGTTCAACATCCATGGCGGATACTTGGAGGCG 167
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 171 AGAAAGATGTACGGATTCGAGGCGCTTACGTTCAATATCCATGGGGGATACTTGGAGGCG 230
Query 168 ATCGTCAGAGGCCACCGTGCTGGTCTTCTCACCACCGCCGATTACAATAATCTATCTCAG 227
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct 231 ATCGTCAGAGGCCACCGTGCTGGGCTTCTCACCACCGCCGATTACAACAATCTATGTCAG 290
Query 228 TGTGAAAACCTAGACGACATCAAGATGCATCTCTCTGCTACCAAATACGGTTCTTATCTC 287
||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| |||
Sbjct 291 TGTGAGAACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTCCTTACCTC 350
Query 288 CAAAACGAACCGTCACCTCTGCATACAACTACAATTGTGGAGAAGTGTACTCTCAAGCTT 347
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 351 CAAAACGAACCATCACCTCTGCATACCACTACAATTGTGGAGAAGTGTACGCTCAAGCTT 410
Query 348 GTTGATGATTACAAGCATATGCTTTGTCAAGCTACTGAACCAATGTCTACCTTTTTAGAG 407
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 411 GTTGATGACTACAAGCATATGCTTTGCCAAGCTACTGAGCCAATGTCTACCTTTTTAGAG 470
Query 408 TACATCAGATATGGCCATATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTGCAC 467
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 471 TACATCAGATATGGTCATATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTTCAC 530
Query 468 GAAAGAGATGTTCAAGAGTTAATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATT 527
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 531 GAGAGAGATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATT 590
Query 528 GCTACACTAGCAGTTGCTCAGAACATGCGTGAACTCTATAGGTTGGTGCTTGTGGACACT 587
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 591 GCTACACTAGCTGTTGCTCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACT 650
Query 588 CCTCTGGCTCCATACTTTTCTGAATGCTTAACATCAGAGGATCTCGATGACATGAACATA 647
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 651 CCTCTGGCTCCATACTTTTCTGAATGCCTAACATCAGAGGATCTCGATGACATGAACATA 710
Query 648 GAGATTATGAGGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAG 707
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 711 GAGATTATGAGGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAACTTCTGTCAG 770
Query 708 AAACTTGGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTGGCCTTTGAAGCAGACAGA 767
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 771 AAACTTGGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTGGCCTTTGAAGCCGACAGG 830
Query 768 AGAGCAGTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAG 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 AGAGCAGTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAG 890
Query 828 AAACTGTACTCCAACTTTGGCCTCCTCTATCCGTATGGCCACGAGGAGCTTGCTATCTGT 887
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 891 AAACTGTACTCCAACTTTGGTCTCCTCTATCCATATGGCCACGAGGAGCTTGCTATCTGT 950
Query 888 GAAGACATAGATCAGGTTCGTGGTGTAATGGAGAAATACCCTCCATATCAAGCTATATTC 947
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 951 GAAGACATAGATCAGGTTCGTGGTGTTATGGAAAAATACCCTCCGTATCAAGCTATATTC 1010
Query 948 TCCAAGATGTCTTATGGAGAAAGCCAGATGCTGGACAAGGCATTTTATGAAGAAGAAGTC 1007
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1011 TCCAAGATGTCTTATGGAGAAAGCCAGATGCTCGACAAGGCATTTTATGAAGAAGAAGTC 1070
Query 1008 AGAAGGCTTTGCTTAGCCTTTGAGCAACAGTTCCATTACGCGGTATTCTTTGCCTATATG 1067
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1071 AGAAGGCTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCGGTATTCTTTGCGTATATG 1130
Query 1068 AGGTTGAGGGAGCAGGAGATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAAT 1127
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AGGTTGCGGGAGCAGGAGATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAAC 1190
Query 1128 CAGAAGTCCAGGATCCACGATAGTGTCGTCTACATGTTCTGAGTCTGGTAAGAACTGTAA 1187
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1191 CAGAAGTCCAGGATCCACGATAGTGTGGTCTACATGTTCTGAGTCTGGTAAGAAGTGTAA 1250
Query 1188 TCTTTCTGAAAAA 1200
||| |||||||||
Sbjct 1251 TCTGTCTGAAAAA 1263
Score = 326 bits (176), Expect = 5e-88
Identities = 201/213 (94%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 1201 GTTGTTGGTTTTCTTCATTACTCCATTTTTACCCGAGAATCTGCTGTACAATCTTGCGGT 1260
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1293 GTTGTTGGTTTTCTTCATTACTCCATTTTTATTAGAGAATCTGCTGTACAATCTTGCGGT 1352
Query 1261 CTACATTCACTGTTTATGTCGCTCTGCGTGTATCAAAAACTCCTTAATAAGAATCTATCC 1320
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1353 CTACATTCACTGTTTATGTCGCTCTGCGTGTATCAAAAACTGCTCAATAAGAATCTATCC 1412
Query 1321 AATTTGTTTGTTTGTTTT-TGGC-CATATTCTTGCTTGGATCCGGTAAACTCTTTGTAAT 1378
||||||||||||| |||| | | ||||||||||||||| ||||||||||||||||||||
Sbjct 1413 AATTTGTTTGTTTTTTTTCTCCCACATATTCTTGCTTGGTTCCGGTAAACTCTTTGTAAT 1472
Query 1379 GTCGAATAATTTACGATGTATACGAATCACTTT 1411
||||||||||||||||||||||||||| |||||
Sbjct 1473 GTCGAATAATTTACGATGTATACGAATTACTTT 1505
> AT3G28710.1 | Symbols: | ATPase, V0/A0 complex, subunit C/D
| chr3:10772903-10775727 REVERSE LENGTH=1430
Length=1430
Score = 1724 bits (933), Expect = 0.0
Identities = 1057/1119 (94%), Gaps = 0/1119 (0%)
Strand=Plus/Plus
Query 58 TCAGATCTCCGGCGACAATCTTTGAGATCTGAATATCTTACAATCAGGAGAGAAAGATGT 117
|||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 78 TCAGATCTCCGGCGACAATCATTGAGATCTGAATATCTTACGTTAAGGAGAGAAAGATGT 137
Query 118 ACGGATTCGAGGCGCTTACGTTCAACATCCATGGCGGATACTTGGAGGCGATCGTCAGAG 177
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 138 ACGGATTCGAGGCGCTTACCTTCAACATCCATGGCGGATATTTGGAGGCGATCGTTAGAG 197
Query 178 GCCACCGTGCTGGTCTTCTCACCACCGCCGATTACAATAATCTATCTCAGTGTGAAAACC 237
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 198 GCCACCGTGCTGGGCTTCTCACCACCGCCGATTACAATAATCTATGTCAGTGTGAGAACC 257
Query 238 TAGACGACATCAAGATGCATCTCTCTGCTACCAAATACGGTTCTTATCTCCAAAACGAAC 297
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 258 TAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGCTCTTATCTCCAAAACGAAC 317
Query 298 CGTCACCTCTGCATACAACTACAATTGTGGAGAAGTGTACTCTCAAGCTTGTTGATGATT 357
|||||||||||||||| || || |||||||||||||||||||| |||||||||||||| |
Sbjct 318 CGTCACCTCTGCATACCACCACCATTGTGGAGAAGTGTACTCTTAAGCTTGTTGATGACT 377
Query 358 ACAAGCATATGCTTTGTCAAGCTACTGAACCAATGTCTACCTTTTTAGAGTACATCAGAT 417
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 378 ACAAGCATATGCTTTGCCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTACATCAGAT 437
Query 418 ATGGCCATATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTGCACGAAAGAGATG 477
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 438 ATGGCCACATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTGCATGAGAGAGATG 497
Query 478 TTCAAGAGTTAATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCTACACTAG 537
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TTCAAGAGTTGATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCTACACTAG 557
Query 538 CAGTTGCTCAGAACATGCGTGAACTCTATAGGTTGGTGCTTGTGGACACTCCTCTGGCTC 597
||||||||||||||||||| |||||||| |||||||||||||||| |||||| ||||||
Sbjct 558 CAGTTGCTCAGAACATGCGGGAACTCTACCGGTTGGTGCTTGTGGATACTCCTTTGGCTC 617
Query 598 CATACTTTTCTGAATGCTTAACATCAGAGGATCTCGATGACATGAACATAGAGATTATGA 657
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 618 CATACTTTTCTGAATGCTTAACGTCAGAGGATCTCGATGACATGAACATAGAGATTATGA 677
Query 658 GGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAACTTGGTG 717
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 GGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAACTTGGTG 737
Query 718 GCGCAACAGCAGAGATTATGTCTGACCTTTTGGCCTTTGAAGCAGACAGAAGAGCAGTGA 777
|||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 738 GCGCAACAGCGGAGATTATGTCTGACCTTTTGGCCTTTGAGGCCGATAGAAGAGCAGTGA 797
Query 778 ATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAACTGTACT 837
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 798 ATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGAAAGAAACTGTACT 857
Query 838 CCAACTTTGGCCTCCTCTATCCGTATGGCCACGAGGAGCTTGCTATCTGTGAAGACATAG 897
| |||||||| || |||||||| ||||| ||||| |||||||||||||| || || ||||
Sbjct 858 CTAACTTTGGTCTACTCTATCCATATGGTCACGAAGAGCTTGCTATCTGCGAGGATATAG 917
Query 898 ATCAGGTTCGTGGTGTAATGGAGAAATACCCTCCATATCAAGCTATATTCTCCAAGATGT 957
| |||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 918 ACCAGGTTCGTGGTGTTATGGAGAAATATCCTCCGTATCAAGCTATATTCTCGAAGATGT 977
Query 958 CTTATGGAGAAAGCCAGATGCTGGACAAGGCATTTTATGAAGAAGAAGTCAGAAGGCTTT 1017
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 978 CTTATGGAGAGAGCCAGATGCTCGACAAAGCATTTTATGAAGAAGAAGTCAGAAGGCTTT 1037
Query 1018 GCTTAGCCTTTGAGCAACAGTTCCATTACGCGGTATTCTTTGCCTATATGAGGTTGAGGG 1077
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |
Sbjct 1038 GCTTAGCCTTTGAGCAGCAGTTCCATTACGCGGTATTCTTTGCGTATATGAGGTTAAGAG 1097
Query 1078 AGCAGGAGATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAATCAGAAGTCCA 1137
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1098 AGCAGGAGATCAGGAACCTTATGTGGATATCTGAATGTGTTGCACAGAACCAGAAGTCCA 1157
Query 1138 GGATCCACGATAGTGTCGTCTACATGTTCTGAGTCTGGT 1176
|||||||||| ||||||||||||||||||||| ||||||
Sbjct 1158 GGATCCACGACAGTGTCGTCTACATGTTCTGATTCTGGT 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69527754825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5