BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484649
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28740.1 | Symbols: CYP81D1 | Cytochrome P450 superfamily pr... 2156 0.0
> AT3G28740.1 | Symbols: CYP81D1 | Cytochrome P450 superfamily
protein | chr3:10788698-10790553 REVERSE LENGTH=1597
Length=1597
Score = 2156 bits (1167), Expect = 0.0
Identities = 1410/1529 (92%), Gaps = 9/1529 (1%)
Strand=Plus/Plus
Query 1 TAATGGAAACTATATACCTAAttctctgtctcttcttc--c-tcctcttcttctctctcg 57
||||||||||||||||||||||||||| |||||||||| | || ||||| | ||||||
Sbjct 21 TAATGGAAACTATATACCTAATTCTCTCTCTCTTCTTCTTCTTCATCTTCCTATCTCTCA 80
Query 58 aactcttGTTCCGACCACGGCGGCCCAAACTAAACCTACCGCCGAGTCCTACACGGCCAT 117
||||||||||| ||||||||| || ||||||||||||||||||||||| | || ||||
Sbjct 81 AACTCTTGTTCGGACCACGGCCGCGTAAACTAAACCTACCGCCGAGTCCGAGTCGACCAT 140
Query 118 TTCCGGTCATCGGACACCTCCACCTCCTAAAGCTACCACTCCACCGTAGATTTCTCTCGC 177
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 141 TTCCGATCATCGGACACCTCCACCTTCTAAAGCTACCACTCCACCGTAGATTTCTCTCTC 200
Query 178 TCTCAAAATCTTTAAACAACGCCAAGATTTTCTCTCTTC-GCCTTGGCACTCGTCTAGTT 236
||||| |||||||||||||||||||||||||||||| || |||| ||| |||||||||||
Sbjct 201 TCTCAGAATCTTTAAACAACGCCAAGATTTTCTCTC-TCAGCCTCGGCTCTCGTCTAGTT 259
Query 237 TTTGTTGTTTCTTCTCATGCCGTCGCTGAAGAATGTTTCACCAAGAACGACGTCGTTTTA 296
||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||
Sbjct 260 TTTGTTGTTTCTTCTCACGCCGTCGCGGAAGAATGTTTCACTAAGAACGACGTCGTGTTA 319
Query 297 GCTAACCGGCCGGAGTTTCTCGTCGGGAAACATATAGCGTACAACTCCACCACCATGGTT 356
||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 320 GCTAACCGGCCGGAGTTTCTCGTCGGGAAACATATAGGGTACAACTCTACGACCATGGTT 379
Query 357 GGTGCGGCTTATGGAGATAGTTGGAGGAATCTTCGACGTATTGGTACCATTGAGATCTTC 416
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 380 GGTGCGGCTTATGGAGATAGTTGGAGGAATCTTCGACGTATTGGCACCATTGAGATCTTC 439
Query 417 TCGTCTCTTAGGCTTAAGAGCTTCTTATCTATCCGTAAAGATGAGATCCGACGGCTCATA 476
||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct 440 TCGTCTCTTAGGCTTAATAGCTTCGTATCTATCCGTCAAGATGAGATCCGACGGCTCATA 499
Query 477 ATTTGTCTATCGAAAAACTCTCAACAAGAGTTTGTGAAAGTGGAGATGAAACCATTGTTT 536
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 500 ATTTGTCTAGCGAAAAACTCTCAACATGGGTTTGTGAAAGTGGAGATGAAACCATTGTTT 559
Query 537 ATGGGTTTGACTATCAACAACATCATTAGAATGGTGGCCGGAAAAAGATTCTACGGTGAT 596
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 ATGTGTTTAACTATCAACAACATCATTAGAATGGTGGCCGGAAAAAGATTCTACGGTGAT 619
Query 597 GGAACAGAGGACGACACCGAGGC-AAGACATGTTAGACAGTTGATTGCGGAGGTGGTTGT 655
||||||||| |||||| |||||| || ||| || |||||| | ||||| ||||| |||||
Sbjct 620 GGAACAGAGAACGACAACGAGGCTAA-ACACGTGAGACAGCTAATTGCCGAGGTAGTTGT 678
Query 656 TAGTGGCGGCGCAGGGAATGCAGCAGATTATTTCTCTATCCTTCGTTATATAACGAATTA 715
||| |||||||||||||| |||||||| || ||| ||||||||||||| ||||||| ||
Sbjct 679 TAGCGGCGGCGCAGGGAACGCAGCAGACTACTTCCCTATCCTTCGTTACGTAACGAACTA 738
Query 716 CGAGAAACATGTCAAGAAGTTAGCTGTTCGGGTTGATGAGTTTTTGCAAAGTCTAGTGAA 775
||||||||||| ||||||||||| | ||| |||||||||||||||||||||||||| ||
Sbjct 739 TGAGAAACATGTTAAGAAGTTAGCAGGTCGTGTTGATGAGTTTTTGCAAAGTCTAGTTAA 798
Query 776 CGAGAAACGTGAGGAGAAAGTAAAGGGTAACACGATGATCGATCATTTGCTTTCTCTACA 835
||||||||||| |||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 799 CGAGAAACGTGTGGAGAAAGTAAAAGGTAACACAATGATCGATCATTTACTTTCTCTACA 858
Query 836 AGAAACTCAGCCTGACTACTACACGGATGTGATCATCAAAGGAATCATACTTGTTATGAT 895
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 AGAAACTCAGCCTGATTACTACACGGATGTGATCATCAAAGGAATCATACTTGTTATGAT 918
Query 896 ACTTGCCGGGACTGACACATCAGCTGGAACTTTAGAATGGGCGATGGCGAATTTGTTGAA 955
||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 919 ACTTGCCGGGACTGATACATCAGCTGGAACGTTAGAATGGGCGATGTCGAATTTGTTGAA 978
Query 956 CCATTCGGAAGTACTACGAAAGGCAAAGACCGAAATCGATGACCAAATTGGTGTAGACCG 1015
|||| | |||||| ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 979 CCATCCAGAAGTATTACGAAAGGCAAAGACCGAAATCGACGACCAAATCGGTGTAGACCG 1038
Query 1016 GTT-GATAGAGGAACAAGACATTGTGAAACTTCCTTATCTTCGGAACATTGTGTCAGAGA 1074
||| | ||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 1039 GTTAG-TAGAGGAACAAGACATTGTGAAACTTCCTTACCTTCAGCACATTGTGTCAGAGA 1097
Query 1075 CTATGCGACTTTATCCGGTGGCTCCAATGCTTCTACCCCACTTAGCATCAGAAGATTGTA 1134
|| | || |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1098 CTTTACGGCTTTATCCGGTGGCTCCAATGCTTTTACCCCACTTAGCATCAGAAGATTGTA 1157
Query 1135 TGGTGGCTGGCTATGATGTCCCGCGTGGCACAATCATATTGGTAAATGCATGGGCCATTC 1194
| || | ||||||||| || || || ||||||||||| ||||| |||||||||||||| |
Sbjct 1158 TAGTTGATGGCTATGACGTTCCACGCGGCACAATCATCTTGGTGAATGCATGGGCCATCC 1217
Query 1195 ATAGAGATCCAAAGTTGTGGGAAGAGCCAGAAAAGTTTAGGCCAGAGAGGTTTGAGAAAG 1254
|||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 1218 ATAGAGATCCAAAGTTATGGGAAGAGCCAGAAAAATTTAAGCCGGAGAGGTTTGAGAAAA 1277
Query 1255 AAGGGGAGGATAAAAAGTTGATATCATTTGGGATCGGACGACGATCTTGCCCTGGATCAG 1314
|||| ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||
Sbjct 1278 AAGGAGAGGATAAAAAGTTGATGCCATTTGGGATTGGACGACGATCTTGCCCTGGTTCAG 1337
Query 1315 GGCTAGCTCAACGGCTAGTGACCTTAGCTCTTGGATCGTTGGTCCAATGTTTTGAGTGGG 1374
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1338 GGCTAGCTCAACGGCTAGTGACTTTGGCTCTTGGATCATTGGTCCAATGTTTTGAGTGGG 1397
Query 1375 AGAGAGTCGGAGAAAAGTATGTAGACATGAGAGAAAGTGAAAGAGGAACCACGATGCGCA 1434
|||| || | |||||||||| ||||||||||||||||||||| ||||||||| ||||| |
Sbjct 1398 AGAGGGTTGAAGAAAAGTATCTAGACATGAGAGAAAGTGAAAAAGGAACCACAATGCGAA 1457
Query 1435 AAGCTACATCGTTGCAAGCTATGTGTAAAACTCGTCCCATTGTCCATAAGGTTTTGGATG 1494
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1458 AAGCTACATCGTTGCAAGCTATGTGTAAAGCTCGTCCCATTGTCCATAAGGTTTTAGATG 1517
Query 1495 CTTCTTGTCCATAACTCTCATCATACAGA 1523
|||||||||||||||| ||||||||||||
Sbjct 1518 CTTCTTGTCCATAACTTTCATCATACAGA 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75150215865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5