BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484689
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29200.1 | Symbols: CM1, ATCM1 | chorismate mutase 1 | chr3:... 1834 0.0
> AT3G29200.1 | Symbols: CM1, ATCM1 | chorismate mutase 1 | chr3:11164393-11166416
REVERSE LENGTH=1370
Length=1370
Score = 1834 bits (993), Expect = 0.0
Identities = 1141/1210 (94%), Gaps = 20/1210 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTGTCTCTTACCAACTCTTTCTCTTTACCCACTGCACCTACCCCCAAACAATCCC 60
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCTCTCCCTCTCTCACCAACTCTTTCTCTTTACCCACTGCACCTACCCCCAAACAATCCC 61
Query 61 TTTATAGTTTATACATCTCTAATTCCTCTACAGATGAttctctgtctcttcctctgattt 120
| |||| |||||||| |||||||| | |||||||| ||||||||||||||||||
Sbjct 62 ----T--TTTA-ACATCTCTCATTCCTCTGCTCATGATTCTTTGTCTCTTCCTCTGATTT 114
Query 121 ctcaatcctctgttttctccgtctcctctgttttgtttcACATCAATGGAGGCGTCATTG 180
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 115 CTCAATCCTCTGTTTTCTCCGTCTCCTCTGTTTT-TTTCACATCAATGGAAGCGTCATTG 173
Query 181 TTGATGAGATCGTCTTGTTGTTCCTCTGCGATTGGTGGGTTCTTCGACCATCGACGTGAA 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 174 TTGATGAGATCGTCTTGTTGCTCCTCTGCGATTGGTGGGTTCTTCGACCATCGACGTGAA 233
Query 241 TTATCAACCTCCACACCCATTTCCACTCTTCTTCCTTTTCCATCATCCAAATCTTCCTTC 300
||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 234 TTATCAACCTCAACACCCATTTCCACTCTTCTTCCTCTTCCATCAACCAAATCTTCTTTC 293
Query 301 GCTATTCGTTGTTCTCTTCCTCTTCCTCAGCCATCAAAGCCACGCTCTGGAACCATCTCT 360
|| ||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 294 TCTGTTCGTTG-----TT-CTCTTCCTCAGCCATCAAAGCCACGCTCTGGAACCAGCTCT 347
Query 361 GTTCACGCCGTTATGACACTTGCTGGATCGTTGACAGGGAAGAAACGAGTGGATGAGAGT 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 348 GTTCACGCCGTTATGACACTCGCTGGATCGTTGACAGGGAAGAAACGAGTGGATGAGAGT 407
Query 421 GAGAGTTTGACTCTTGAAGGTATTAGAAACTCATTGATCCGTCAAGAGGATAGCATTATA 480
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 408 GAGAGTTTGACTCTTGAAGGTATTAGAAACTCTTTGATCCGTCAAGAGGACAGCATTATA 467
Query 481 TTTGGGTTGTTGGAGAGAGCCAAGTACTGTTACAATGCTGATACTTATGATCCTACTGCT 540
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TTTGGGCTATTGGAGAGAGCCAAGTACTGTTACAATGCTGATACTTATGATCCTACTGCT 527
Query 541 TTTGACATGGATGGTTTTAATGGTTCTTTGGTTGAGTACATGGTTAAAGGCACTGAGAAG 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TTTGACATGGATGGTTTCAATGGTTCTTTGGTTGAGTACATGGTTAAAGGCACTGAGAAG 587
Query 601 CTTCACGCTAAGGTTGGTAGGTTCAAGAGTCCTGATGAACATCCTTTCTTCCCTGATGAT 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 588 CTTCACGCTAAGGTTGGTAGGTTTAAGAGTCCTGATGAACATCCTTTCTTCCCTGATGAT 647
Query 661 CTACCAGAGCCTATGTTGCCGCCTCTTCAGTACCCAAAGGTGTTGCATTTTGCTGCTGAT 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 648 CTACCAGAGCCTATGTTGCCTCCTCTTCAGTACCCAAAGGTGTTGCATTTTGCTGCTGAT 707
Query 721 TCAATAAACATAAACAAGAAGATATGGAACATGTACTTCAGAGATCTTGTTCCAAGACTA 780
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 708 TCGATAAACATAAACAAGAAGATATGGAACATGTACTTCAGAGACCTTGTTCCAAGACTT 767
Query 781 GTGAAGAAAGGCGATGATGGTAATTACGGATCAACAGCTGTCTGTGACGCTATCTGCCTT 840
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 768 GTGAAGAAAGGCGATGATGGTAACTACGGCTCAACAGCTGTCTGTGACGCTATCTGCCTT 827
Query 841 CAGTGTCTATCAAAGAGGATCCATTACGGTAAATTTGTTGCAGAGGCCAAATTCCAAGCC 900
|||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct 828 CAGTGTCTCTCAAAGAGAATCCATTACGGTAAATTTGTTGCAGAAGCTAAATTTCAAGCC 887
Query 901 TCACCCGAAGCATACGAGTCCGCCATCAAAGCACAAGATAAGGATGCATTGATGGATATG 960
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 888 TCACCCGAAGCATACGAGTCCGCCATCAAAGCACAAGATAAGGATGCACTGATGGATATG 947
Query 961 CTGACATTCCCGACTGTGGAAGATGCGATTAAGAAGAGAGTTGAGATGAAAACCCGAACA 1020
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 948 CTGACATTCCCGACTGTGGAAGATGCGATAAAGAAGAGAGTTGAGATGAAAACCCGAACA 1007
Query 1021 TACGGGCAAGAAGTGAAAGTCGGGATGgaagagaaagaagaagaagaag--GAA---A-T 1074
|||||||||||||||||||| |||||||| ||||||||||||||||||| ||| | |
Sbjct 1008 TACGGGCAAGAAGTGAAAGTTGGGATGGAGGAGAAAGAAGAAGAAGAAGAAGAAGGGAAT 1067
Query 1075 GAATCTCATGTTTACAAAATCAGTCCAATCTTAGTTGGTGACTTGTATGGCGATTGGATC 1134
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 1068 GAATCTCATGTTTACAAAATCAGTCCGATCTTAGTTGGTGACTTATATGGAGATTGGATC 1127
Query 1135 ATGCCCTTAACAAAGGAGGTTCAAGTTGAGTACTTACTCAGAAGACTGGACTGAGACAAG 1194
||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 1128 ATGCCTTTAACAAAAGAGGTTCAAGTGGAGTACTTGCTCAGAAGACTGGACTGAGGCAAC 1187
Query 1195 aaaaaaaTAA 1204
|| |||||||
Sbjct 1188 AACAAAATAA 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59136242010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5