BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484717
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
AT3G30180.1 | Symbols: CYP85A2, BR6OX2 | brassinosteroid-6-oxid... 2776 0.0
AT5G38970.1 | Symbols: BR6OX1, ATBR6OX, CYP85A1, BR6OX | brassi... 1197 0.0
> AT3G30180.1 | Symbols: CYP85A2, BR6OX2 | brassinosteroid-6-oxidase
2 | chr3:11810737-11813765 FORWARD LENGTH=1784
Length=1784
Score = 2776 bits (1503), Expect = 0.0
Identities = 1675/1755 (95%), Gaps = 23/1755 (1%)
Strand=Plus/Plus
Query 1 CCTATATAAACAATGCCACACACACCCATTTAGTCCCAAACCAAAGACTCTTAACCAtct 60
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 4 CCTATATAAACAACGCCACACACACCCATTTAGTCCC-AACCAAAGACTCTTTACCATCT 62
Query 61 c--tctccctctatctcgctctctctTTG-A-AAACAGAACCaaaaaaa-a-a-a--aaa 111
| |||| |||| | | | | | | | ||| | || ||||||| | | | |||
Sbjct 63 CTTTCTCTCTCTGT-TTG--AAGACATAGCACAAA-A-AAAAAAAAAAAGACAGAGCAAA 117
Query 112 aaaa-a-aCAAAGATGGGCATAACGATGATGATTTTGGGTCTTCTTGTGATCATTGTTTG 169
|||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 118 AAAACACACAAAGATGGGCATAATGATGATGATTTTGGGTCTTCTTGTGATCATTGTTTG 177
Query 170 CATATGTTCTGCTCTTCTCCGATGGAACCAGATGCGATATTCCAAAAAAGGTCTTCCTCC 229
||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 178 TTTATGTACTGCTCTTCTCCGATGGAACCAGATGCGATATTCTAAGAAAGGTCTTCCTCC 237
Query 230 TGGAACCATGGGCTGGCCAATTTTTGGTGAAACCACTGAGTTTCTTAAACAAGGACCAGA 289
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 238 TGGAACCATGGGCTGGCCAATATTTGGTGAAACGACTGAGTTTCTTAAACAAGGACCAGA 297
Query 290 TTTCATGAAAAACCAAAGACTAAGATATGGGAGTTTCTTCAAGTCTCACATTCTTGGTTG 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTTCATGAAAAACCAAAGACTAAGATATGGGAGTTTCTTCAAGTCTCACATTCTTGGTTG 357
Query 350 CCCAACAATAGTCTCAATGGACGCAGAGCTAAACAGATACATTTTAATGAACGAATCGAA 409
|||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||
Sbjct 358 CCCAACAATAGTCTCAATGGACGCAGAGTTAAACAGATACATTCTAATGAATGAATCGAA 417
Query 410 AGGACTTGTCGCCGGTTACCCACAATCGATGCTCGATATCCTCGGGACATGCAACATAGC 469
||||||||| ||||||||||| ||||| ||||| ||||| || |||||||||||||||||
Sbjct 418 AGGACTTGTTGCCGGTTACCCGCAATCTATGCTTGATATTCTAGGGACATGCAACATAGC 477
Query 470 CGCGGTTCATGGCCCGAGCCACCGGCTCATGAGAGGCTCGTTGCTTTCTTTAATAAGCCC 529
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 478 TGCGGTTCATGGCCCGAGCCACCGGCTAATGAGAGGCTCGTTGCTTTCTTTAATAAGCCC 537
Query 530 GGCCATGATGAAAGACCATCTCTTGCCTAAGATTGATGATTTCATGAGAAACTATCTTTG 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AACCATGATGAAAGACCATCTCTTGCCTAAGATTGATGATTTCATGAGAAACTATCTTTG 597
Query 590 TGGTTGGGATGATCTTGAGACAGTTGATATCCAAGAAAAGACCAAACATATGGCATTTTT 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGGTTGGGATGATCTTGAGACAGTTGATATCCAAGAAAAGACCAAACATATGGCATTTTT 657
Query 650 GTCATCGTTGTTACAAATAGCTGAGACTTTGAAAAAACCAGAGGTTGAAGAATATAGAAC 709
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATCATCGTTGTTACAAATAGCTGAGACTTTGAAAAAACCAGAGGTTGAAGAATATAGAAC 717
Query 710 AGAGTTTTTCAAGCTTGTTGTGGGAACTCTTTCGGTCCCGATCGATCTCCCGGGAACGAA 769
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 718 AGAGTTTTTCAAGCTTGTTGTGGGAACTCTATCGGTCCCGATCGATATCCCGGGAACGAA 777
Query 770 CTACCGCAGTGGAGTCCAAGCAAGAAACAATATCGATAGGTTATTGACAGAACTGATGCA 829
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 778 TTACCGCAGTGGAGTCCAAGCAAGAAACAACATCGATAGGTTATTGACAGAACTGATGCA 837
Query 830 AGAAAGAAGAGAGTCTGGAGAAACTTTCACAGACATGTTGGGTTACTTGATGAAGAAGGA 889
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGAAAGAAAAGAGTCTGGAGAAACTTTCACAGACATGTTGGGTTACTTGATGAAGAAGGA 897
Query 890 AGATAACCGATACTTGTTAACCGATAAAGAGATAAGAGATCAAGTCGTAACGATCTTGTA 949
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 898 AGATAACCGATACTTGTTAACCGATAAAGAGATAAGAGATCAAGTGGTAACGATCTTGTA 957
Query 950 TTCGGGTTATGAGACTGTCTCTACAACTTCTATGATGGCTCTTAAGTATCTCCATGATCA 1009
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 958 TTCCGGTTATGAGACTGTCTCTACAACCTCCATGATGGCTCTTAAGTATCTCCATGATCA 1017
Query 1010 TCCAGAAGCTCTTGAAGAACTCAGAAGAGAACATTTGGCTATAAGGGAGAGAAAACGACC 1069
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TCCAAAAGCTCTTGAAGAACTCAGAAGAGAACATTTGGCTATAAGGGAGAGAAAACGACC 1077
Query 1070 TGACGAACCGCTCACTCTCGACGATATTAAATCTATGAAATTCACTCGAGCTGTGATCTT 1129
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1078 TGACGAACCGCTCACTCTCGACGATATTAAATCGATGAAATTCACTCGAGCTGTGATCTT 1137
Query 1130 TGAGACATCAAGATTGGCAACGATTGTTAATGGTGTCCTGAGGAAAACTACTCACGACTT 1189
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1138 TGAGACATCAAGATTGGCAACGATTGTTAATGGTGTCCTTAGGAAAACTACTCACGACTT 1197
Query 1190 GGAACTCAACGGTTATTTAATCCCAAAAGGTTGGAGAATTTACGTATACACAAGAGAGAT 1249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGAACTCAACGGTTATTTAATCCCAAAAGGTTGGAGAATTTACGTATACACAAGAGAGAT 1257
Query 1250 TAACTATGATACATCTCTTTATGAAGATCCAATGATCTTTAACCCATGGAGATGGATGGA 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TAACTATGATACATCTCTTTATGAAGATCCAATGATCTTTAACCCATGGAGATGGATGGA 1317
Query 1310 AAAGAGCTTAGAATCAAAGAGCTATTTCTTACTCTTTGGAGGTGGAGCTAGGCTTTGCCC 1369
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1318 AAAGAGCTTAGAATCAAAGAGCTATTTCTTACTCTTTGGAGGTGGAGTTAGGCTTTGCCC 1377
Query 1370 TGGAAAGGAACTAGGAATCTCTGAAGTCTCAAGCTTCCTTCACTACTTTATTACAAAATA 1429
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1378 TGGAAAGGAACTAGGAATCTCGGAAGTCTCAAGCTTCCTTCACTACTTTGTTACAAAATA 1437
Query 1430 CAGATGGGAAGAGAATGGAGAAGACAAATTAATGGTCTTTCCAAGAGTTTCTGCACCAAA 1489
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TAGATGGGAAGAGAATGGAGAAGACAAATTAATGGTCTTTCCAAGAGTTTCTGCACCAAA 1497
Query 1490 AGGATACCATCTTAAGTGTTCACCTTACTGACTAGTTTTGTCCTAATATTGAAAAATGTG 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AGGATACCATCTTAAGTGTTCACCTTACTGACTAGTTTTGTCCTAATATTGAAAAATGTG 1557
Query 1550 TAAATAAATCAATGAAGGGTCATTTTGTAGGGCTAATTAACCTATTTTATCTATTAAATC 1609
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TAAATAAATCTATTAAGGGTCATTTTGTAGGGCTAATTAACCTATTTTATCTATTAAATC 1617
Query 1610 TCTCAAGATCTTAGAGGAGATGGATAATGTACAGAGAGA--G-GAGAAGAAGAAAATGTA 1666
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 1618 TCTCAAGATCATAGAGGAGATGGATAATGTACAGAGAGAAAGAGAGAAGAAGAAAATGGA 1677
Query 1667 ATATAGAAAAAA-TAAAATATTTGAAATGTTGAGCTTAGTCTTTTATATCTTGTAAATTT 1725
|||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1678 ATATAGAAAAAAATAAAATATTTGAAATGTTGAGCTTAGTCTCTTAT--CTTGTAAATTT 1735
Query 1726 GTAACCCATAAATTT 1740
|||||||||||||||
Sbjct 1736 GTAACCCATAAATTT 1750
> AT5G38970.1 | Symbols: BR6OX1, ATBR6OX, CYP85A1, BR6OX | brassinosteroid-6-oxidase
1 | chr5:15594674-15597885 REVERSE LENGTH=1770
Length=1770
Score = 1197 bits (648), Expect = 0.0
Identities = 1179/1429 (83%), Gaps = 62/1429 (4%)
Strand=Plus/Plus
Query 121 AGATGGGCA-TAACGATGATGATTTTGGGTCTTCT-TGTGATCAT--TGTTTGCATATGT 176
||||||| | || |||| |||| |||||||||| | ||||||| ||| | | | |||
Sbjct 110 AGATGGG-AGCAATGATGGTGATGATGGGTCTTCTCT-TGATCATCGTGTCT-C-TCTGT 165
Query 177 TCTGCTCTTCTCCGATGGAACCAGATGCGATATTCCAAAAAAGGTCTTCCTCCTGGAACC 236
|| ||||| || |||||||| |||||||||||| |||| || ||||||||||||||||||
Sbjct 166 TCCGCTCTCCTTCGATGGAATCAGATGCGATATACCAAGAATGGTCTTCCTCCTGGAACC 225
Query 237 ATGGGCTGGCCAATTTTTGGTGAAACCACTGAGTTTCTTAAACAAGGACC-AGATTTCAT 295
|||||||||||||| ||||| |||||||| |||||||| |||||||| || | | |||||
Sbjct 226 ATGGGCTGGCCAATCTTTGGCGAAACCACCGAGTTTCTCAAACAAGGCCCCA-ACTTCAT 284
Query 296 GAAAAACCAAAGACTAAGATATGGGAGTTTCTTCAAGTCTCA-CATTCTTGGTTGCCCAA 354
|| |||||||||||| |||| |||||||||||||| ||||| | |||| ||||| ||||
Sbjct 285 GAGAAACCAAAGACTCCGATACGGGAGTTTCTTCAAATCTCATC-TTCTAGGTTGTCCAA 343
Query 355 CAATAGTCTCAATGGACGCAGA-GCTAAACAGATACATTTTAATGAACGAATCGAAAGGA 413
| || ||||||||||| |||| | |||||||||||||||||| ||||||||| |||||
Sbjct 344 CGTTAATCTCAATGGACTCAGAAG-TAAACAGATACATTTTAAAGAACGAATCAAAAGGT 402
Query 414 CTTG-TCGCC-GGTTACCCACAATCGATGCTCGATATCCTCGGGACATGCAACATAGCCG 471
||| | || |||||||||||||||||||| ||||| || ||||| || ||||| || |
Sbjct 403 -TTGGTT-CCTGGTTACCCACAATCGATGCTTGATATACTTGGGACTTGTAACATGGCTG 460
Query 472 CGGTTCATGGCCCGAGCCACCGGCTCATGAGAGGCTCG-TTGCTTTCTTTAATAAGCCCG 530
||||||| || ||||||||||||| |||||||||||| || || ||| | |||||| ||
Sbjct 461 CGGTTCACGGTTCGAGCCACCGGCTTATGAGAGGCTCGCTT-CTGTCTCTCATAAGCTCG 519
Query 531 GCCATGATGAAAGACCATCTCTTGCCTAA-GATTGATGATTTCATGAGAAACTATCTTTG 589
||||||||| ||| ||| |||||||||| | ||||| | |||||||||| ||||||| |
Sbjct 520 ACCATGATGAGAGATCATATCTTGCCTAAAG-TTGATCACTTCATGAGAAGCTATCTT-G 577
Query 590 -TG-GTTGGGATGATCTTGAGAC-AGTTGATATCCAAGAAAAGACCAAACATATGGCATT 646
| || || |||| |||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 578 ATCAGT-GGAATGAGCTTGAGGTTA-TTGATATCCAAGATAAGACCAAACATATGGCATT 635
Query 647 TTTGTCATCGTTGTTACAAATAGCTGAGA-CTTTGAA-AAAACCAGAGGTTGAAGAATAT 704
||| || || || |||||| |||| || ||| || ||||||| |||||||||| |
Sbjct 636 TTTATCTTCACTGACACAAATCGCTGGGAACTT--AAGAAAACCATTTGTTGAAGAAT-T 692
Query 705 -AGAACAG-AGTTTTTCAAGCTTGTTGT-GGGAACTCTT-TCGGTCCCGATCGATCTCCC 760
| ||| | | || |||||||||||||| |||| || || || || ||||| ||||| ||
Sbjct 693 CAAAACTGCA-TTCTTCAAGCTTGTTGTTGGGA-CT-TTATCCGTTCCGATTGATCTTCC 749
Query 761 GGGAACGAACTACCGCAGTGGAGTCCAAGCAAGAAACAATATCGATAGGTTATTGACAGA 820
||| || || || || | ||| ||||||||||||| || || |||||||| | | |||
Sbjct 750 GGGCACAAATTATCGTTGCGGAATCCAAGCAAGAAATAACATTGATAGGTTGCTAAGAGA 809
Query 821 ACTGATGCAAGAAAGAAGAGAGTCTGGAGAAACTTTCACAGACATGTTGGGTTACTTGAT 880
|||||||||||| | ||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 810 GCTGATGCAAGAACGTAGAGATTCTGGAGAAACATTCACAGACATGTTAGGTTACTTGAT 869
Query 881 GAAGAAGGAAGATAACCGATACTTGTTAACCGATAAAGAGATAAGAGATCAAGTCGTAAC 940
||||||||||| |||||||||| |||||||||| ||||||||||||| ||||| || ||
Sbjct 870 GAAGAAGGAAGGTAACCGATACCCGTTAACCGATGAAGAGATAAGAGACCAAGTTGTGAC 929
Query 941 GATCTTGTATTCGGGTTATGAGACTGTCTCTACAACTTCTATGATGGCTCTTAAGTATCT 1000
||| |||||||||||||| || ||||||||||| || || ||||||||||||||||| ||
Sbjct 930 GATTTTGTATTCGGGTTACGAAACTGTCTCTACGACCTCAATGATGGCTCTTAAGTACCT 989
Query 1001 CCATGATCATCCAGAAGCTCTTGAAGAACTCAGAAGA-GAACATTTGGCTATA-AGGGAG 1058
|||||||| ||| |||||||| ||||||| ||| | || |||||||| || |||||
Sbjct 990 TCATGATCACCCAAAAGCTCTTCAAGAACTAAGA-GCTGAGCATTTGGC-ATTCAGGGAA 1047
Query 1059 AGAAAACGACCTGACGAACCGCTCACTCTCGACGATATTAAATCTATGAAATTCACTCGA 1118
|||||||||| |||||||| ||| ||| || || | || || ||||| |||||||||
Sbjct 1048 AGAAAACGACAGGACGAACCACTCGGTCTTGAGGACGTGAAGTCAATGAAGTTCACTCGA 1107
Query 1119 GCTGTGATCTT-TGAGACATCAAGATTGGCAACGATTGTTAATGGTGTCCTGAGGAAAAC 1177
|||||||| || |||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 1108 GCTGTGAT-TTATGAGACATCAAGATTGGCAACGATCGTTAATGGGGTCCTAAGGAAAAC 1166
Query 1178 TACTCACGACTTGGAACTCAACGGTTATTTAATCCCAAAAGGTTGGAGAATTTACGTATA 1237
||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1167 TACTCGTGACTTGGAAATCAACGGTTATTTAATCCCAAAAGGATGGAGAATTTATGTATA 1226
Query 1238 CACAAGAGAGATTAACTATGATACATCTCTTTATGAAGATCCAATGATCTTTAACCCATG 1297
||| || || ||||| || ||| || |||||||||||| ||| |||||||||| |||||
Sbjct 1227 CACGAGGGAAATTAATTACGATGCAAATCTTTATGAAGACCCATTGATCTTTAATCCATG 1286
Query 1298 GAGATGGATGGAA-AAGAGCTTAGAATCA-AAGAGCT-ATTTCTTACTCTTTGGAGGTGG 1354
|||||||||| || |||||||| || ||| || | || || ||| | |||||||||||
Sbjct 1287 GAGATGGATG-AAGAAGAGCTTGGAGTCACAAAA-CTCATG-CTTTGTGTTTGGAGGTGG 1343
Query 1355 -AGCTAGGCTTTGCCCTGGAAAGGAACTAGGAATC-TCTGA-AGTCTCAAGCTTCCTTCA 1411
| | |||||||| ||||| ||||||||||| || || || | |||| ||||| || ||
Sbjct 1344 GA-CAAGGCTTTGTCCTGGTAAGGAACTAGGGATTGTC-GAGA-TCTCGAGCTTTCTCCA 1400
Query 1412 CTACTTTATTACAAAATACAGATGGGAAGAGAAT-GGAGAAGACAAATTAATGGTCTTTC 1470
|||||| |||| | |||||||||||| || ||| |||| || |||||||||| ||||
Sbjct 1401 TTACTTTGTTACGAGATACAGATGGGAGGA-AATAGGAGGGGATGAATTAATGGTGTTTC 1459
Query 1471 CAAGAGTTTCTGCACCAAAAGGATACCATCTTAAG-TGTTCACCTTACT 1518
| ||||||| |||||||||||| | |||||||| | | |||||| ||||
Sbjct 1460 CGAGAGTTTTTGCACCAAAAGGCTTCCATCTTAGGAT-TTCACCCTACT 1507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86043734130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5