BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484732
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29770.1 | Symbols: ATMES11, MES11 | methyl esterase 11 | ch... 1934 0.0
> AT3G29770.1 | Symbols: ATMES11, MES11 | methyl esterase 11 |
chr3:11648341-11650839 FORWARD LENGTH=1577
Length=1577
Score = 1934 bits (1047), Expect = 0.0
Identities = 1266/1369 (92%), Gaps = 26/1369 (2%)
Strand=Plus/Plus
Query 1 CTTTCTCTCCACCACTTTCACCTGAA-TCCCACGTCActc--tctctctaaaactccata 57
||||||| |||||||||||||||||| || |||||||||| |||||||||| | |||||
Sbjct 1 CTTTCTCGCCACCACTTTCACCTGAATTCTCACGTCACTCTTTCTCTCTAAACCACCATA 60
Query 58 aagctcaaaccttttctcattctctctctcgaaaactcACAATCTTTTTCACACTCTTCT 117
|||||||||| |||||||||||||||||| ||| || | ||||||||||||||||||||
Sbjct 61 AAGCTCAAACTTTTTCTCATTCTCTCTCT--AAAGCT-AAAATCTTTTTCACACTCTTCT 117
Query 118 TCATGTTCAAGCAATGGGAAATCTCTGTTCTTTGTTTACTCCGCCAAAACCCGTGAA-AA 176
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 118 TCATGTTCAAGCAATGGGAAACCTCTGTTCTTTGTTTACTCCGCCAAAACCCGTGAAGAA 177
Query 177 AACGAAAACCCATCACAAAAAGACAATCTTCCATTGGAGTTTCTTCTTCCGGGTCGGGTC 236
|| |||||||||||||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct 178 AA-GAAAACCCATCACAAAAAGACAATCTTCTATCGGAGCTTCTTCTTCCGGGTCGGGTC 236
Query 237 TTAATAGTAACCGTTGGAACAACCGGGTCAGATCATCTTCTTCTAGAAGAGACAACAAGT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TTAATAGTAACCGTTGGAACAACCGGGTCAGATCATCTTCTTCTAGAAGAGACAACAAGT 296
Query 297 TTGAAGATGCTGTGATTCAAGAACATGCTCTTGCTGCTGCTGCTGTTTTGTTCCGACAGC 356
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCGAAGATGCTTTGATTCAAGAACATGCTCTTGCTGCTGCTGCTGTTTTGTTCCGACAGC 356
Query 357 AAAACGGCGGTGGA---TCGTTGCCGTTTGATCGGTCGGCTTCGCAACGTTATCAAGGTT 413
||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 357 AAAACGGTGGTGGAGGATCGTTGCCGTTTGATCGGTCGGCTTCACAACGTTATCAAGGTT 416
Query 414 CTTGTTCGAAGAAGAATCAGTTGCCTCGAAGTTCAAGTTCGAGGTCAAGGTCTTCTACGG 473
|||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
Sbjct 417 CTTGTTCGAAGAAGAACCAGTTGCCTCGAAGCTCGAGTTCGAGGTCAAGGTCTTCTACAG 476
Query 474 ATCCTCTGTTACAACCTCATCAGTTTCTTAATCAGGGTGTGAAGGTAGATGACTTGGAGA 533
|||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
Sbjct 477 ATCCTCTGTTACAACCTCATCAGTTTCTTAATCAGGGTATAAAGCTAGATGACTTGGAAA 536
Query 534 CAAACCATTTTGTTCTCATCCATGGAGGGGGTTTTGGTGCTTGGTGTTGGTATAAAACCA 593
||||||||||||| || | |||||||| ||||||| ||||||||||||||||||||||
Sbjct 537 CAAACCATTTTGTCCTTGTTCATGGAGGTAGTTTTGGCGCTTGGTGTTGGTATAAAACCA 596
Query 594 TTGCACTTCTTGAGGAAGATGGTTTTAAAGTTACCGCTATAGACTTAGCTGGTTGCGGTA 653
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 597 TTGCACTTCTTGAGGAAGATGGTTTTAAAGTTACCGCTATAGACTTAGCAGGTTGCGGTA 656
Query 654 TTAACTCGATTAATATAAATGGCATTGCTAGTTTGTCACAATATGTGAAGCCACTTACCG 713
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 657 TTAACTCGATTAATATAAATGGCATCGCTAGTTTGTCACAATATGTCAAGCCACTTACCG 716
Query 714 ATATTCTTGAAAAGCTTCCCATAGGAGAGAAGGTGATCTTGGTTGGTCATGATTTTGGTG 773
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 717 ATATTCTTGAAAAGCTTCCCATAGGAGAGAAGGTGATATTGGTCGGTCACGATTTTGGTG 776
Query 774 GAGCATGTATATCTTATGCTATGGAAATGTTTCCTTCAAAGATTTCAAAAGCGGTTTTCC 833
|||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 777 GAGCATGTATATCTTATGCTATGGAACTCTTTCCTTCAAAGATTTCGAAAGCGGTTTTCC 836
Query 834 TCGCTGCGGCGATGTTGACTAATGGTCAAAGTACACTGGATATGTTCTCCTTGAAGGCAG 893
||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| |
Sbjct 837 TCGCTGCAGCGATGTTAACAAATGGTCAAAGTACACTCGATATGTTCTCCTTGAAGGCCG 896
Query 894 GTCAGAACGATTTAATGAGAAAAGCTCAGATTTTTATCTACAAAAATGGTAATGAAAACC 953
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 897 GTCAGAACGATTTAATGAGAAAAGCTCAGATATTTATCTACACAAATGGTAATGAAAACC 956
Query 954 CTCCAACCGCCATTGACTTAGACAAATCTCTTCTCAGAGACCTTCTGTTCAATCAAAGCC 1013
|||||||||| ||||||||||||||||||||||||| ||||||| ||||||| |||||||
Sbjct 957 CTCCAACCGCAATTGACTTAGACAAATCTCTTCTCAAAGACCTTTTGTTCAACCAAAGCC 1016
Query 1014 CTTCAAAGGACATTGCATTGGCCTCTGTTTCAATGAGGTCAATCCCATTTGCGCCGGTTC 1073
|||| |||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1017 CTTCGAAGGACGTTGCATTGGCTTCTGTATCAATGAGGTCAATTCCATTTGCGCCGGTTC 1076
Query 1074 TTGAGAAACTCTCTATCTCAGATGCTAACTACGGATCAGTTAGACGGTACTACATAGAGA 1133
|||| ||||||||| | || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1077 TTGAAAAACTCTCTCTTTCGGATGCTAACTACGGATCAGTTAGACGGTACTATATAGAGA 1136
Query 1134 CGCTAGAAGACAATGCTATACCAATGACTGTCCAAGAAAACATGATTAATAGTAGTCCAC 1193
|| |||||||||||||||||||| ||||| | |||||||||||||| ||||||||||| |
Sbjct 1137 CGTTAGAAGACAATGCTATACCAGTGACTCTTCAAGAAAACATGATCAATAGTAGTCCTC 1196
Query 1194 CTGAAAAAGTTTACCGGTTAAAAGGCGCTGACCATGCTCCTTTCTTTTCTAAGCCACAAG 1253
||||||| ||||| |||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 1197 CTGAAAAGGTTTATCGGTTAAAAGGCGCCGACCATGCTCCTTTCTTTTCCAAACCACAAG 1256
Query 1254 CTTTGCATAAACTTCTGCTCGAGATTGCCAGAATCAGC--T-CT-A-CT-TA-A-C-T-A 1303
||||||||||||||||||| ||||| |||||||| ||| | || | || | | | | |
Sbjct 1257 CTTTGCATAAACTTCTGCTTGAGATCGCCAGAATTAGCCCTGCTTAACTCTTTATCATGA 1316
Query 1304 T-T-CACTAACTGGTGTT-CTAAAGTGGCTTCATGAGATCTCTCTTCCT 1349
| | |||||||||||||| | |||||| || ||| ||||||||||||||
Sbjct 1317 TATTCACTAACTGGTGTTTC-AAAGTGTCT-CATCAGATCTCTCTTCCT 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66415321035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5