BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484793
Length=2633
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43240.1 | Symbols: | ARID/BRIGHT DNA-binding domain-contai... 4036 0.0
> AT3G43240.1 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein | chr3:15209936-15214742 REVERSE LENGTH=2642
Length=2642
Score = 4036 bits (2185), Expect = 0.0
Identities = 2508/2657 (94%), Gaps = 50/2657 (2%)
Strand=Plus/Plus
Query 1 TTGTTCTTCAGA-TTTTTCT-AATTTTAATC--TTGTGTTTGTGATCTTTTGTGATGGGC 56
|||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 12 TTGTTCTTCAGATTTTTTCTAAATTTTAATCTTTTGTGTTTGTGATCTTTTGTGATGGGC 71
Query 57 CTC-TCTCCTCCATTTAGGTTTCTCTTTTTCCAATAGAAA-TCGTCTTCTTCTTTTTCTG 114
||| ||| ||| ||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 72 CTCTTCT-CTCTGTTTAGGTTTCTCTTTTTCCAATA-AAATTCGTCTTCTTC-TTTTCTG 128
Query 115 GGT-CTCGTCGATTTCTTCTCTACGAGTTCGAAATTA-GG---tttt-tt-tt-ttAGGG 166
||| | ||||||||||||| ||||||||||||||||| || |||| || || ||||||
Sbjct 129 GGTAC-CGTCGATTTCTTC-CTACGAGTTCGAAATTAGGGTTTTTTTCTTCTTCTTAGGG 186
Query 167 CTGA-TTTGACTCGGATTTATTCGACACTAGTGGGTTCTTGACGAACTTATTCGTTGAAT 225
|||| ||||| || ||| | |||||||||||| ||||||||||||||||||
Sbjct 187 CTGATTTTGA---GG------TCG--AGTAGTGGGTTCTTAACGAACTTATTCGTTGAA- 234
Query 226 TTTCTTTAGGG-TTTCTTTGTGGAATTGTTCTCTTTAG-TTG-TTTGAAGTTTGGTTATG 282
||||||||||| ||||||||||| | ||| || ||| | || ||||||||||||||
Sbjct 235 TTTCTTTAGGGTTTTCTTTGTGGTCTAGTT-TC-ATAGAGAGATTAGAAGTTTGGTTATG 292
Query 283 CTATTGAATGATGTTTCATGGACAAGGGTTTTCGAGAAACCGTTGTAATGTTGTGGCAGT 342
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CTATTGAACGATGTTTCATGGACAAGGGTTTTCGAGAAACCGTTGTAATGTTGTGGCAGT 352
Query 343 TGTTTCT-G-G-AGAGCTTTGCGATACTAATAACCAGATAGATGGAGCTCCTCATCAACA 399
||||||| | | |||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 353 TGTTTCTGGAGCAGAGCTTTGCGATACTAATAACCAGATAGATGGAACTTCTCATCAAC- 411
Query 400 ACCTAAATACCCTTTTCCAGATCTCTCTTCTTCAGGGAGAGTCAAGTTTCAGGTACTGAA 459
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 412 -CC-AAATACCCTTTTCCAGATCTCTCTTCTTCAGGGCGTCTCAAGTTTCAGGTACTGAA 469
Query 460 TAATCCTACGCCTGAGGAGTTCCAGGTTGCTGTTAACTCTTCAGCAACGGATTTTGTCTA 519
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 470 TAATCCTACGCCGGAGGAGTTCCAGGTTGCTGTTAACTCTTCAGCAACGGATTTTGTGTA 529
Query 520 CTTGCAAGGGGAGTATAGTGGAGATAGTGATGAAGTTGGTCCCTTAGTGTTGGGATATAC 579
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CTTGCAAGGGGAACATAGTGGAGATAGTGATGAAGTTGGTCCCTTAGTGTTGGGATATAC 589
Query 580 TGATTTTTCTACTCCTGATGCCTTGGTTACTCTGTTTGGTTCCACATTACCAACAACGGT 639
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 590 TGATTTTTCTACTCCTGATGCCTTGGTTACTCTGTTTGGTTCCACATTACCGACAACGGT 649
Query 640 TTACCTTGAGCTCCCAAATGGTGAAGAATTGGCTCAAGCACTCTACTCTAAGGGTGTTCA 699
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 650 TTACCTTGAGCTCCCAAATGGTGAAGAATTAGCTCAAGCACTCTACTCTAAGGGTGTTCA 709
Query 700 ATATGTTATTTATTGGAAAGATGTTTTCTCGAAATATGCAGCCTGCCATTTTCGCCATGC 759
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 710 ATATGTTATTTATTGGAAAAATGTTTTCTCGAAATATGCAGCCTGCCATTTTCGCCATTC 769
Query 760 TCTGTTTTCAGTCATACAGAGTTCGTGCAGCGATACATGGGATGTGTTCCATGTTGCAGA 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TCTGTTTTCAGTCATACAGAGTTCGTGCAGCGATACATGGGATGTGTTCCATGTTGCAGA 829
Query 820 AGCATCTTTCCGACTCTATTGTACTAGTGACAATGCTGTCCTTCCTTCTAACAGCAACCG 879
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 830 AGCATCTTTCCGACTCTATTGTACAAGTGACAATGCTGTCCTTCCTTCTAACAGCAACCG 889
Query 880 TAAAATGAATTATGAGATGGGACCCTGCTTGCTGGGAGAACCTCCAAAGATTGATGTGGT 939
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 890 TAAAATGAATTATGAGATGGGACCTTGCTTGCTTGGAGAACCTCCAAAGATTGATGTGGT 949
Query 940 TTCGCCGGAAGCTGATGAACTAGAAGAGGAAAATTCATTAGAGAGCCTCCCATCAATAAA 999
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TTCACCGGAAGCTGATGAACTAGAAGAGGAAAATTCATTAGAGAGCCTCCCATCAATAAA 1009
Query 1000 GATATATGATGAAGATGTTACCGTGAGGTTTCTTTTGTGTGGACCACCATGCACACTGGA 1059
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1010 GATATATGATGAAGATGTTACTGTGAGGTTTCTTTTGTGTGGACCACCATGCACAGTGGA 1069
Query 1060 TACATTTTTACTGGGATCGTTGGTGGATGGACTTAATGCTCTCTTGAGAATAGAAATGCG 1119
|||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1070 TACATTTTTACTGGGATCTTTGATGGATGGACTTAATGCTCTCTTGCGAATAGAAATGCG 1129
Query 1120 AGGAAGTAAGCTCCATAATCGTTCTAGTGCTCCAGCACCTCCTCTTCAAGCAGGAACATT 1179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 AGGAAGTAAGCTCCATAACCGTTCTAGTGCTCCAGCACCTCCTCTTCAAGCAGGAACATT 1189
Query 1180 TACTCGTGGTGTAGTGACCATGCGTTGTGATGTCTCGACCTGTTCTTCAGCACACATATC 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 TACTCGTGGTGTAGTGACCATGCGTTGTGATGTCTCGACCTGTTCTTCAGCACACATATC 1249
Query 1240 AATGCTGGTGTCTGGAAATGCGCAGACCTGTTTCAGTGATCAGCTTTTGGAAAATCACAT 1299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 AATGCTTGTGTCTGGAAATGCGCAGACCTGTTTCAGTGATCAGCTTTTGGAAAATCACAT 1309
Query 1300 AAAACATGAGGTCGTTGAGAAGATCCAACTAGTCCATTCAGTGG-GAAACTCAGAAGAAA 1358
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1310 AAAACATGAGGTCGTTGAGAAGATCCAACTAGTCCATTCAGTGGTG-AACTCAGAAGAAA 1368
Query 1359 CAAAGCGGGGGTTCTCTGAGCCTCGGAGATCTGCCTCAATAGCTTGTGGGGCAAGTGTGT 1418
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1369 CAAAGCGGGGTTTCTCTGAGCCTCGTAGATCTGCCTCAATAGCTTGTGGAGCAAGTGTGT 1428
Query 1419 GTGAAGTTTCGATGCAAGTCCCAACATGGGCTCTGCAGGTTTTAAGACAGCTGGCACCTG 1478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 1429 GTGAAGTTTCGATGCAAGTCCCAACATGGGCTCTGCAGGTTTTAAGACAGTTGGCGCCGG 1488
Query 1479 ATGTGTCATACCGCAGTTTAGTTGTCCTTGGAGTAGCAAGCATTCAGGGGTTGTCTGTTG 1538
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1489 ATGTGTCATACCGCAGTTTAGTCGTTCTTGGAGTAGCTAGCATTCAGGGGTTGTCTGTTG 1548
Query 1539 CTTCCTTTGAAAAAGATGATGCAGAACGTTTACTTTTCTTCTGCGGACAACAGATCAATG 1598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CTTCCTTTGAGAAAGATGATGCAGAACGTTTACTTTTCTTCTGCGGACAACAGATCAATG 1608
Query 1599 ATACTTCAAATCATGATACTCTTCTATCCAAAATTCCTCACTGGTTGACGCCTCCTTTGC 1658
||||||||||||||||| ||||| |||||||||||||| ||||||| || ||||||||||
Sbjct 1609 ATACTTCAAATCATGATGCTCTTTTATCCAAAATTCCTAACTGGTTAACACCTCCTTTGC 1668
Query 1659 CAACCAGAAAAAGATCCGAACCATGCAGAGAAAGTAAGGAAATCGAAAACGGGGGACCTA 1718
||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 1669 CAACCAGAAAAAGATCCGAGCCATGCAGAGAAAGTAAGGAAATTGAAAACGGAGGACCTA 1728
Query 1719 CATCAAGGAAAATCAACGTGGCTGCTTTGAGACCAATACCTCACACCCGTCGACATAAGA 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 CATCAAGGAAAATCAACGTGGCTGCTTTGAGACCAATACCTCACACCCGTCGACATAAGA 1788
Query 1779 TGATACCTTTCTCTGGTTACTCTGAAATTGGAAGATTTGATGGTGACCACACCAAAGGAA 1838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 TGATACCTTTCTCTGGTTACTCTGAAATTGGAAGATTTGATGGTGACCACACCAAAGGAA 1848
Query 1839 GCTTGCCTATGCCTCCAAAGCATGGTGCATCAGGAGGCACTCCGGTAACTCACCGTAAAG 1898
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1849 GCTTGCCTATGCCTCCAAAGCATGGTGCATCAGGTGGCACTCCAGTAACTCACCGTAAAG 1908
Query 1899 CTTTTTCTGGTTCGTACCAGAGAAAGCAAATAATCTCACTGAACCCTCTGCCTCTCAAGA 1958
|||| |||||||||||||||||||||||||| |||||||| |||||||| ||| | || |
Sbjct 1909 CTTTCTCTGGTTCGTACCAGAGAAAGCAAATCATCTCACTAAACCCTCTACCTTTAAAAA 1968
Query 1959 AACACGACTGTGGAAGAGCGCATATTCAAGTTTGCTCAGAGGAGGAGTTTCTGAGGGATG 2018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 AACACGACTGTGGAAGAGCGCATATTCAAGTTTGCTCAGAGGAGGAGTTTCTGAGGGATG 2028
Query 2019 TGATGCAGTTCCTGCTAATACGAGGACATAGCCGGCTTGTTCCTCCAGGGGGACTTGCGG 2078
| |||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 2029 TAATGCAGTTTCTGCTAATACGAGGACATACCCGGCTAGTTCCTCCAGGGGGACTAGCGG 2088
Query 2079 AGTTTCCGGATGCTGTTCTTAACTCAAAGCGGCTTGATTTGTTCAATCT-GTACAGAGAG 2137
||||||| ||||||||||| |||||||| ||||||||| | ||||| || ||| ||||||
Sbjct 2089 AGTTTCCAGATGCTGTTCTCAACTCAAAACGGCTTGATCTCTTCAA-CTTGTATAGAGAG 2147
Query 2138 GTTGTATCACGGGGAGGGTTCCACGTAGGGAATGGGATCAACTGGAAGGGACAAGTTTTC 2197
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2148 GTTGTATCACGGGGAGGGTTCCATGTAGGTAATGGGATCAACTGGAAGGGACAAGTTTTC 2207
Query 2198 TCGAAGATGCGGAACCACACGCTCACAAACAGAATGACTGGTGTGGGTAATACCCTGAAA 2257
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2208 TCAAAGATGCGCAACCACACACTCACAAACAGAATGACTGGTGTGGGTAATACCCTGAAA 2267
Query 2258 AGACACTATGAGACGTATCTACTGGAGTATGAATATGCTCATGATGATGTTGATGGAGAG 2317
||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 2268 AGACACTATGAGACGTATCTATTGGAGTATGAGTATGCTCATGATGATGTAGATGGAGAG 2327
Query 2318 TGTTGTTTAATTTGTCGCAGTAGCACAGCGGGTGACTGGGTGAACTGTGGATCATGTGGA 2377
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2328 TGCTGTTTAATATGTCGCAGTAGCACAGCTGGTGACTGGGTGAACTGTGGATCATGTGGA 2387
Query 2378 GAGTGGGCTCATTTCGGATGTGACAGAAGGCCTGGCCTCGGCGCGTTCAAAGATTATGCG 2437
|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 2388 GAGTGGGCTCATTTCGGATGTGACAGAAGGCCTGGCCTCGGCGCCTTCAAGGACTATGCA 2447
Query 2438 AAAACGGATGGGTTGGAATATGTGTGCCCAAATTGTAGCGTCTCGAATTACAGGAAGAAG 2497
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2448 AAAACAGATGGGTTGGAATATGTGTGCCCAAATTGTAGTGTCTCAAATTACAGGAAGAAG 2507
Query 2498 ACTCCA-AAGACGTCCAATGGCGGCTTGCTTGTACCTTAGCTTTGTACCTTAGCTTCATG 2556
||| | ||||| ||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 2508 TCTC-AGAAGACCTCCAACGGTGGCTTGCTTGTACCTTAGCTTTGTACCTTAGGTTCATG 2566
Query 2557 TTTCTTCTTTTGTTGTACTTTTTGCCTTGGAACCAAATGATTGATTGATTCCTCTGATAT 2616
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 2567 TTTCTTCTTTTGTTGTACTTTT-GCCTTGGAACCAAATGATTGATTGATTCCTCTAATGT 2625
Query 2617 TTCACGAGtttttttGC 2633
|||||||||||||||||
Sbjct 2626 TTCACGAGTTTTTTTGC 2642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130735053458
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5