BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484885
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44860.1 | Symbols: FAMT | farnesoic acid carboxyl-O-methylt... 1602 0.0
AT3G44870.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1526 0.0
> AT3G44860.1 | Symbols: FAMT | farnesoic acid carboxyl-O-methyltransferase
| chr3:16379633-16381070 FORWARD LENGTH=1234
Length=1234
Score = 1602 bits (867), Expect = 0.0
Identities = 1041/1124 (93%), Gaps = 15/1124 (1%)
Strand=Plus/Plus
Query 2 AATTATCACAAGACAAGAGATAGAAGAGAAACATGTCGACTTCTTTCACAATGATCGGCG 61
||| |||||||||| |||| || |||||| ||||||||||||| ||||||||||||||||
Sbjct 25 AATCATCACAAGACCAGAGTTAAAAGAGAGACATGTCGACTTCATTCACAATGATCGGCG 84
Query 62 GTGAAGGTCGCAACAGTTACCAAGAACATTCGAAATACCAGGGAGCACTGGTTATAGCTG 121
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 85 GTGAAGGTCCCAACAGTTACCGGGAACATTCGAAATACCAGGGAGCACTGGTTATAGCTG 144
Query 122 CAAAGGAAAAGATCAATGAAGCCATTTCCACGAAACTCGATATCGACTTTACTTCAAATC 181
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 145 CAAAGGAAAAGATCAATGAAGCCATCTCCACGAAACTCGATATCGACTTTACTTCAAATC 204
Query 182 TTGTTAACATAGCAGATTTTGGTTGTTCCTCTGGACCAAACACTTTCACAGCGGTACAAA 241
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 205 TTGTTAACATAGCTGATTTTGGTTGTTCCTCTGGACCGAACACTTTCACCGCGGTACAAA 264
Query 242 CCATAATTGATGCTGTGGAAAACAAGTATAAGAAAGAAAGTACCATCGATGGAATCGAGT 301
|| ||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 265 CCTTAATTGATGCTGTGGAAAACAAGTATAAGAAAGAAAGTAATATTGAGGGAATCGAGT 324
Query 302 TCCAAGTTTTCTTCAATGATTCTTCTAACAACGATTTCAACACTCTGTTCAAGACACTTC 361
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 325 TCCAAGTTTTCTTCAATGATTCTTCAAACAACGATTTTAACACTCTCTTCAAGACACTTC 384
Query 362 CTCCGGCTAGAA-GATATTTCGCAACCGGAGTTCCGGCTTCTTTCTTTGGTCGTGTTCTT 420
||||||||||| | |||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 385 CTCCGGCTAGACTG-TATTTCGCAAGTGGAGTACCGGGTTCTTTCTTTGGTCGTGTTCTT 443
Query 421 CCTAGAAATAGTCTCCATGTGGGAGTTTCTTCTTATTCACTCCATTTCGTTTCCAAGATT 480
|||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 444 CCTAAAAATAGTCTTCATGTGGGAGTTTCTTCTTACTCACTCCATTTCGTATCCAAGGTT 503
Query 481 CCTAAAGAAATCAAAGACCGCGATTCGCCTGTTTGGAACCAGGACATACATTGCTCTGGA 540
|| ||||||||||||||||| || |||| ||| |||||| | |||||||||||||| |||
Sbjct 504 CCCAAAGAAATCAAAGACCGTGACTCGCTTGTGTGGAACAAAGACATACATTGCTCCGGA 563
Query 541 TCTTCAAAAGAAGTTACAAAATTGTTTCTCGATCAATACAAGATCGACGTGGGGAGTTTC 600
||||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 564 TCTTCAAAAGAAGTTGTGAAATTGTATCTCGGTCAATACAAGATCGACGTGGGAAGTTTC 623
Query 601 TTGAACGCGAGAGCTCAAGAGCTCGTGTCTGGTGGATTGCTATTGCTTCTTGGATCATGT 660
|||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 624 TTGACCGCGAGAGCTCAAGAGCTCGTGTCCGGTGGATTACTATTGCTTCTTGGTTCATGT 683
Query 661 CGTCCAAATGGAGTTCAAATGTTTGAAACGGTTGAAGGAATGATGATTGATTTCATTGGA 720
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 684 CGTCCAACTGGAGTTCAAATGTTTGAAACGGTTGAAGGCATGATGATTGATTTCATTGGA 743
Query 721 -GCTTCTCTTAATGAAATTGCTAACCAGGGTCTAATAGATCAACAAAAGCTTGACACTTT 779
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 744 AG-TTCTCTTAATGAAATTGCTAACCAGGGTCTCATAGATCAACAAAAGCTTGACACTTT 802
Query 780 TAAATTGCCTATCTACGCTCCACAA-GCGGATGAATTGAAGCAAATCATCGAGGATAACG 838
||||||||||||||| |||||| || | |||||||||||||||||||||||||||||||
Sbjct 803 TAAATTGCCTATCTATGCTCCA-AATGTGGATGAATTGAAGCAAATCATCGAGGATAACA 861
Query 839 GGTGTTTCACGGTTGAGGTATTCGAAAAAATTAGCCACGCAATGGGGGAGTATCCGTTAG 898
|||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct 862 AGTGTTTCACGATTGAGGCATTCGAAAAGATTAGCCACGCAAAGGGGGAGTATCCGTTAG 921
Query 899 ACCCCGAGTTTTTGACGGTCTC-C-TTTAAGGTCACGGTTGGAGGATCTGTAGCTTCACT 956
||||||||| ||||||| || | | ||||||||||| ||||||||||| |||||||||||
Sbjct 922 ACCCCGAGTATTTGACG-TC-CGCGTTTAAGGTCACTGTTGGAGGATCAGTAGCTTCACT 979
Query 957 ATTTGGGCAAGATGCGATGGAGAAAACATATGAGCTTGTGAAAGAGAAGACGCAAGAAAT 1016
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 980 ATTTGGGCAAGATGGGATGGAGAAAACCTATGAGCTTGTGAAAGAGAAGACGCAAGAAAT 1039
Query 1017 GCTTCCTCAATTAGCCAAAGCCAAACCTGGAATGCAATACCTCATTGTGCTTCGAAGAAA 1076
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1040 GCTTCCTCAAATAGCCAAAGCCAAACCTGGAATGCAATACCTCATTGTGCTTCGAAGGAA 1099
Query 1077 CTGATTTCCATGGTCAATGTAGATCTGTGAAATGAAATAAATCT 1120
|||||||| ||| | | | ||||||||||||||||||||||||
Sbjct 1100 CTGATTTC-ATGAT-A-T--AGATCTGTGAAATGAAATAAATCT 1138
> AT3G44870.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:16382219-16383605
FORWARD LENGTH=1198
Length=1198
Score = 1526 bits (826), Expect = 0.0
Identities = 1021/1113 (92%), Gaps = 22/1113 (2%)
Strand=Plus/Plus
Query 2 AATTATCACAAGACAAGAGATAGAAGAGAAACATGTCGACTTCTTTCACAATGATCGGCG 61
||| ||||||||||| ||| || |||||| ||||||||||||| |||||||||||||| |
Sbjct 27 AATCATCACAAGACAGGAGTTAAAAGAGAGACATGTCGACTTCATTCACAATGATCGGTG 86
Query 62 GTGAAGGTCGCAACAGTTACCAAGAACATTCGAAATACCAGGGAGCACTGGTT-ATAGCT 120
||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||| | ||||
Sbjct 87 GTGAAGGTCCCAACAGTTACCGAGACCATTCGAAATACCAGGGAGCATTGGTTGA-AGCT 145
Query 121 GCAAAGGAAAAGATCAATGAAGCCATTTCCACGAAACTCGATATCGACTTTACTTCAAAT 180
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 146 GCAAAGGAAAAGATCAATGAAGCCATCTCTACGAAACTCGATATCGACTTTACTTCAAAT 205
Query 181 CTTGTTAACATAGCAGATTTTGGTTGTTCCTCTGGACCAAACACTTTCACAGCGGTACAA 240
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 206 CTTGTTAACATAGCAGATTTTGGTTGCTCTTCTGGACCAAACACTTTCACAGCGGTGCAA 265
Query 241 ACCATAATTGATGCTGTGGAAAACAAGTATAAGAAAGAAAGTACCATCGATGGAATCGAG 300
||| |||| ||||||||||||||||||||||||||||||||| | || ||||||
Sbjct 266 ACCTTAATCGATGCTGTGGAAAACAAGTATAAGAAAGAAAGT---A---AT---ATCGAG 316
Query 301 TTCCAAGTTTTCTTCAATGATTCTTCTAACAACGATTTCAACACTCTGTTCAAGACACTT 360
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 317 TTCCAAGTTTTCTTCAATGATTCTTCGAACAATGATTTCAACACTCTTTTCAAAACACTT 376
Query 361 CCTCCGGCTAGA-AGATATTTCGCAACCGGAGTTCCGGCTTCTTTCTTTGGTCGTGTTCT 419
|||||||||||| | |||||||||| ||||| |||| |||||||||||||||||||||
Sbjct 377 CCTCCGGCTAGACTG-TATTTCGCAAGTGGAGTACCGGGTTCTTTCTTTGGTCGTGTTCT 435
Query 420 TCCTAGAAATAGTCTCCATGTGGGAGTTTCTTCTTATTCACTCCATTTCGTTTCCAAGAT 479
||||||||||||||||||| ||||||||||| |||| |||||||||||| | ||||||||
Sbjct 436 TCCTAGAAATAGTCTCCATTTGGGAGTTTCTGCTTACTCACTCCATTTCATATCCAAGAT 495
Query 480 TCCTAAAGAAATCAAAGACCGCGATTCGCCTGTTTGGAACCAGGACATACATTGCTCTGG 539
||| |||||| | ||||| || ||||| ||||| |||||| |||||||||||||||||||
Sbjct 496 TCCCAAAGAAGTTAAAGATCGTGATTCTCCTGTGTGGAACAAGGACATACATTGCTCTGG 555
Query 540 ATCTTCAAAAGAAGTTA-CAAAATTGTTTCTCGATCAATACAAGATCGACGTGGGGAGTT 598
||||||||||| || || ||||||||| ||| | ||||||||||||||| ||||||||||
Sbjct 556 ATCTTCAAAAG-AGGTAGCAAAATTGTATCTTGGTCAATACAAGATCGATGTGGGGAGTT 614
Query 599 TCTTGAACGCGAGAGCTCAAGAGCTCGTGTCTGGTGGATTGCTATTGCTTCTTGGATCAT 658
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 615 TCTTGAACGCGAGAGCGCAAGAGCTTGTGTCCGGTGGATTGCTATTGCTTCTTGGTTCAT 674
Query 659 GTCGTCCAAATGGAGTTCAAATGTTTGAAACGGTTGAAGGAATGATGATTGATTTCATTG 718
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 675 GTCGTCCAAATGGAGTTCAAATGTTTGAAACGGTTGAAGGCATGATGATTGATTTTATTG 734
Query 719 GAGCTTCTCTTAATGAAATTGCTAACCAGGGTCTAATAGATCAACAAAAGCTTGACACTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GAGCTTCTCTTAATGAAATTGCTAACCAGGGTCTAATAGATCAACAAAAGCTTGACACTT 794
Query 779 TTAAATTGCCTATCTACGCTCCACAAGCGGATGAATTGAAGCAAATCATCGAGGATAACG 838
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TTAAGTTGCCTATCTATGCTCCACAAGCGGATGAATTGAAGCAAATCATCGAGGATAACG 854
Query 839 GGTGTTTCACGGTTGAGGTATTCGAAAAAATTAGCCACGC-AATGGGGGAGTATCCGTTA 897
||||||||||| |||||||||||||||| |||| ||||| || ||| ||||||||||||
Sbjct 855 GGTGTTTCACGATTGAGGTATTCGAAAATATTATACACGCCAA-GGGAGAGTATCCGTTA 913
Query 898 GACCCCGAGTTTTTGACGGTCTCCTTTAAGGTCACGGTTGGAGGATCTGTAGCTTCACTA 957
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 914 GACCCCGAGTTTTTAACAGTCTCCTTTAAGGTCACGGTTGGAGGATCAGTAGCTTCACTA 973
Query 958 TTTGGGCAAGATGCG-ATGGAGAAAACATATGAGCTTGTGAAAGAGAAGACGCAAGAAAT 1016
||||||||||||| | ||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct 974 TTTGGGCAAGATG-GTATGGAGAAAACCTTTGAGCTTGTGAAAGAGAAGACACAAGAAAT 1032
Query 1017 GCTTCCTCA-ATTAGCCAAAGCCAAACCTGGAATGCAATACCTCATTGTGCTTCGAAGAA 1075
||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1033 GCTTCCTCAGAT-AGCCAAAGCCAAACCCGGAATGCAATACCTCATTGTGCTTCGAAGAA 1091
Query 1076 ACTGATTTCCATGGTCAATGTAGATCTGTGAAA 1108
|||| |||| ||| || || ||||||| |||||
Sbjct 1092 ACTGTTTTC-ATGATCTATTTAGATCTTTGAAA 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54919396230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5