BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484888 Length=862 Score E Sequences producing significant alignments: (Bits) Value AT3G44890.1 | Symbols: RPL9 | ribosomal protein L9 | chr3:16386... 1123 0.0 > AT3G44890.1 | Symbols: RPL9 | ribosomal protein L9 | chr3:16386434-16388466 FORWARD LENGTH=920 Length=920 Score = 1123 bits (608), Expect = 0.0 Identities = 815/906 (90%), Gaps = 50/906 (6%) Strand=Plus/Plus Query 1 ACTAAAACTGTGCGCTC---TTATCTCTGCTTTGAACTGAACTCAGCATTT-GCAATGGC 56 |||| |||||||||||| |||||||||||||||| |||| ||||| ||| || ||||| Sbjct 18 ACTACAACTGTGCGCTCTTGTTATCTCTGCTTTGAAGTGAAATCAGC-TTTGGCTATGGC 76 Query 57 TTCTTCTACAGCTTTGTCTCTCTCATGGAGTTCCTCTCCTTGTTGGTCACACAGCTTCAA 116 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 77 TTCTTCGACAGCTTTGTCTCTCTCATGGAGCTCCTCTCCTTGTTGGTCACACAGCTTCAA 136 Query 117 TGGCGGTGCAAATGAAACCCTAAAAGTATCTGAGCGAAGGTTCAATTTTGAAGTTGTTTC 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 TGGCGGTGCAAATGAAACCCTAAAAGTATCTGAGCGAAGGTTCAATTTTGAAGTTGTTTC 196 Query 177 CCAGAAGAAAGCTAAGAAACTTCGAAAGGTAATCTTGAAAGAGGATGTGACGGATTTGGG 236 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 197 CCAGAAGAAAGCTAAGAAACTTCGCAAGGTAATTTTGAAAGAGGATGTGACGGATTTGGG 256 Query 237 TAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTTTTGCCTAC 296 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 257 TAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTCTTGCCTAC 316 Query 297 GGGAAAGGCTCAGCTTATGACTCCTCTTCTGCTCAAGGAATTGAAGATGGAAGAAGAACG 356 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 317 TGGAAAGGCTCAGCTTATGACTCCACTTCTGCTCAAGGAATTGAAGATGGAAGACGAACG 376 Query 357 GATAGAGGCAGAAAAGCAAAGGGTGAAAGAAGAAGCACAACAACTGGCAATGGTATTTGA 416 ||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| | Sbjct 377 GATTGAGGCAGAGAAGCAAAGGGTGAAAGAAGAGGCACAACAACTGGCGATGGTATTCCA 436 Query 417 GACCGTTGGTGCTTTCAAGGTTAAACGCAAAGGTGGTAAAGGCAAACTGATATTTGGATC 476 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 437 AACCGTTGGTGCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC 496 Query 477 TGTCACAGCACAAGACCTCGTCGACATCATCAAAGCGCAGCTTCAAAGAG-ACATAGACA 535 ||||||||| |||||||||||||||||||||||| | ||||| |||| || |||| |||| Sbjct 497 TGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAA-AGGACATCGACA 555 Query 536 AACGCCTTGTCTCTCTCCCGGAAATACGTGAAACAGGAGAATACATAGCCGAACTCAAGC 595 ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 556 AACGCCTTGTCTCTCTCCCAGAAATCCGTGAAACCGGAGAATACATAGCCGAACTCAAGC 615 Query 596 TTCATCCCGATGTCACAGCTCGAGTTAGGATCAACGTTTTCGCCAACTAACCCTTCAATG 655 |||| ||||||||||| |||||||||| |||||| |||||||| |||||| ||||||| | Sbjct 616 TTCACCCCGATGTCACTGCTCGAGTTAAGATCAATGTTTTCGCTAACTAAACCTTCAACG 675 Query 656 ATTCAAGACTCCTACTGCATCCCAAGAAACGCAGATAGAGAGGGAAAAGAGAGTCGTCTC 715 |||||||||||||||||||||||||| |||| | ||||||||||||||||||| | ||| Sbjct 676 ATTCAAGACTCCTACTGCATCCCAAGGAACGTA--TAGAGAGGGAAAAGAGAGTAGCCTC 733 Query 716 TTG-----AGG-TTG----T-G--AAGTTTTTTCTTGTAGATC-TTTGATGCATTTGTAT 761 ||| ||| ||| | | |||||||| ||| ||||| |||||||||||||||| Sbjct 734 TTGTGGTGAGGATTGAAGGTTGTGAAGTTTTTCCTT-TAGATTGTTTGATGCATTTGTAT 792 Query 762 TTTTGCTTATTTTTG-AATCTGGAAAC---AA--GT-TA-T-T--------A--T-AT-- 799 ||||||| ||||||| ||||||||||| || || || | | | | || Sbjct 793 TTTTGCT-ATTTTTGGAATCTGGAAACGCTAAAAGTATAATATTCTCTTGCAAGTTATGA 851 Query 800 T-TT--CTTGAAGTTATATTGTATTCATTTGTCTGTTGAAGTGATGAGAATGCTTAAATT 856 | || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 852 TATTTACTTGAAGTTATATTGTATTCATTTGTCTGTTGAAGTGATGAGAATGCTTAAATT 911 Query 857 AACACT 862 |||||| Sbjct 912 AACACT 917 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42045981039 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5