BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484948
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45640.1 | Symbols: ATMPK3, MPK3, ATMAPK3 | mitogen-activate... 2364 0.0
> AT3G45640.1 | Symbols: ATMPK3, MPK3, ATMAPK3 | mitogen-activated
protein kinase 3 | chr3:16756770-16758698 FORWARD LENGTH=1483
Length=1483
Score = 2364 bits (1280), Expect = 0.0
Identities = 1412/1476 (96%), Gaps = 8/1476 (1%)
Strand=Plus/Plus
Query 1 ACCGCGAAAACTCATCTCTGCTCAATCCTCAGTTTCAGTCTCTGTATTGACTCTTGACTG 60
||||||||||||||||||||||||||||||| | ||||||||| | ||||||| |||||
Sbjct 1 ACCGCGAAAACTCATCTCTGCTCAATCCTCAATCTCAGTCTCTCTGTTGACTC-CGACTG 59
Query 61 TTATATAAAAACCATAC-AATACCTTCAGATTCACTACTTCAAACCTCAAACCAACCACT 119
|||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 TTATAT-AAAACCATACAAATACCTTCAGATTCACTACTTCAAACCTCAAAGCAACCACT 118
Query 120 GAAGCTTGACTTTGATCGATTGAGAGAGAGAAATGAACACCGGCGGCGGCCAATACACGG 179
||| || |||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 119 GAATCTCGACTTTGATCAATT--GAGAGAGAAATGAACACCGGCGGTGGCCAATACACGG 176
Query 180 ATTTTCCGGCGGTGGAAACTCACGGAGGACAGTTCATAAGTTACGATATCTTCGGTAGTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ATTTTCCGGCGGTGGAAACTCACGGAGGACAGTTCATAAGTTACGATATCTTCGGTAGTT 236
Query 240 TATTCGAGATCACATCTAAGTATCGTCCTCCGATTATACCAATCGGTCGTGGAGCTTATG 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 237 TATTCGAGATCACATCTAAGTATCGTCCTCCGATTATACCAATTGGTCGTGGAGCTTATG 296
Query 300 GAATCGTTTGCTCTGTGTTGGATACGGAGACCAACGAGCTTGTAGCTATGAAGAAGATAG 359
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 297 GAATCGTTTGCTCTGTGTTGGATACGGAGACGAACGAGCTAGTAGCGATGAAGAAGATAG 356
Query 360 CGAATGCTTTCGATAATCATATGGATGCTAAGCGTACGCTTCGTGAGATTAAGCTTCTTC 419
| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 357 CTAATGCTTTTGATAATCATATGGATGCTAAGCGTACGCTTCGTGAGATCAAGCTTCTTC 416
Query 420 GTCATCTAGATCATGAAAACATTATAGCTATAAGAGATGTTGTTCCACCACCACTACGAC 479
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 GTCATCTTGATCATGAAAACATTATAGCTATAAGAGATGTTGTTCCACCACCACTAAGAA 476
Query 480 GACAGTTCAGTGATGTTTATATTTCTACTGAATTAATGGATACTGATCTTCATCAAATCA 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 477 GACAGTTCAGTGATGTTTATATCTCTACTGAATTAATGGATACTGATCTTCATCAAATCA 536
Query 540 TCAGATCTAATCAAAGTTTATCAGAAGAACACTGTCAGTACTTCTTGTACCAGCTACTTC 599
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCAGATCTAACCAGAGTTTATCAGAAGAACACTGTCAGTACTTCTTGTACCAGCTACTTC 596
Query 600 GAGGGCTTAAGTATATCCACTCAGCTAACATTATTCATAGGGATTTAAAGCCGAGCAATC 659
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GAGGACTGAAGTATATCCACTCAGCTAACATTATTCATAGGGATTTAAAGCCGAGCAATC 656
Query 660 TTCTGTTGAACGCGAATTGCGATTTAAAGATTTGTGATTTCGGTCTTGCTAGACCTACTT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTCTGTTGAACGCGAATTGCGATTTAAAGATTTGTGATTTCGGTCTTGCTAGACCTACTT 716
Query 720 CAGAGAATGACTTCATGACTGAGTATGTTGTTACGAGATGGTATAGAGCACCTGAGCTTC 779
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CAGAGAATGATTTTATGACTGAGTATGTTGTTACGAGATGGTATAGAGCACCTGAGCTTC 776
Query 780 TGTTGAACTCTTCTGATTATACAGCTGCTATAGATGTTTGGTCTGTTGGTTGTATCTTTA 839
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 777 TGTTGAACTCTTCAGATTACACAGCTGCTATTGATGTTTGGTCTGTTGGTTGTATCTTTA 836
Query 840 TGGAGCTTATGAATAGAAAGCCTTTGTTCCCTGGTAAAGACCATGTTCATCAAATGCGAT 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 837 TGGAGCTTATGAATAGAAAGCCTTTGTTCCCTGGTAAAGACCATGTTCATCAAATGCGCT 896
Query 900 TATTGACAGAGTTGCTTGGCACACCGACAGAAGCTGATCTCGGGTTTACACACAACGAGG 959
|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||
Sbjct 897 TATTGACAGAGTTGCTTGGCACACCGACAGAATCTGATCTCGGTTTTACTCACAATGAGG 956
Query 960 ATGCGAAAAGATACATCCGGCAACTTCCCAACTTCCCACGCCAGCCGTTAGCAAAACTTT 1019
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 957 ATGCGAAAAGATACATCCGGCAACTTCCCAACTTCCCACGTCAGCCCTTAGCTAAACTTT 1016
Query 1020 TCTCTCATGTTAACCCATTGGCCATTGATCTAGTTGACCGAATGTTGACGTTTGACCCCA 1079
||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1017 TCTCTCATGTTAACCCAATGGCCATTGATCTTGTTGACAGAATGTTGACGTTTGACCCCA 1076
Query 1080 ACAGAAGAATCACTGTTGAACAAGCTCTGAATCACCAGTACCTTGCTAAATTACACGACC 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1077 ACAGAAGAATCACTGTTGAACAAGCTCTGAATCACCAGTACCTTGCTAAATTGCACGACC 1136
Query 1140 CGAATGATGAGCCAATCTGTCAAAAGCCATTCTCTTTCGAGTTCGAACAACAGCCTCTGG 1199
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1137 CGAATGATGAGCCAATCTGTCAAAAGCCATTCTCTTTTGAGTTCGAACAACAGCCTCTGG 1196
Query 1200 ACGAGGAACAGATAAAAGAGATGATCTACCAAGAAGCCATAGCACTCAATCCAACATACG 1259
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ATGAGGAACAGATAAAAGAGATGATCTACCAAGAAGCCATAGCACTCAATCCAACATACG 1256
Query 1260 CTTAAAAGAGCAGCAGCCCCGTGATTGCCCGGTATTACCCAATAACCATCCGAATGGCTG 1319
||| ||| ||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1257 GTTAGAAGTGCAGCAGCCCCGTGAATGCCTGGTATTACCCAATAACCATCCGAATGGCTA 1316
Query 1320 CTTAGTATCTTTGCCTGTTCTTTTATTCATGTACTTCTTCCACATATGTAATCTTGTAA- 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CTTAGTATCTTTGCCTGTTCTTTTATTCATGTACTTCTTCCACATATGTAATCTTGTAAC 1376
Query 1379 TTCTATTTGTTTGTTCATGTTATTTACTACTAGTGATTGAGTGTAGCTCCAATGTAAAGT 1438
|| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1377 TTTTATTTGTTTGTTCATGTTATTTACTGCTAGTGATTAAGTGTAGCTCCAATGTAAAGT 1436
Query 1439 ACTCCA-TATATGAAACCATATCTATAGACTTTTTT 1473
|||||| | ||| ||| ||||||||||||||||||
Sbjct 1437 ACTCCAGT-TATTAAAGAATATCTATAGACTTTTTT 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5