BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484959
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45770.1 | Symbols: | Polyketide synthase, enoylreductase f... 2093 0.0
> AT3G45770.1 | Symbols: | Polyketide synthase, enoylreductase
family protein | chr3:16805562-16807856 REVERSE LENGTH=1401
Length=1401
Score = 2093 bits (1133), Expect = 0.0
Identities = 1305/1386 (94%), Gaps = 20/1386 (1%)
Strand=Plus/Plus
Query 1 AAAAACCCAAAACGACGTCATTTCTTATATCGCTGTGAGAGAGTGTGTGACGGCGGAGAG 60
||||| ||||||||||||| |||||||||||| || |||||| || |||||||||||||
Sbjct 21 AAAAAACCAAAACGACGTCGTTTCTTATATCGTTGCCAGAGAGAGTTTGACGGCGGAGAG 80
Query 61 ATATGGCGGCGCTGATGAAGTCAGTCGCCGGCCGAGCTTTAAAATTCTCATCGACGGCGA 120
||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 81 ATATGGCGGCGTTGATGGAGTCAGTCGTCGGCCGAGCTCTAAAATTCTCATCGACGGCGA 140
Query 121 ATTTCAGGTCAAAACGACACGTCAAAACACCAGCACTCTGTATCAAATCATTCTCCACCG 180
|||||||||||| |||| || | |||||||| ||||||||||||||||||||||||||
Sbjct 141 ATTTCAGGTCAATCCGACGCGGCGAAACACCAACACTCTGTATCAAATCATTCTCCACC- 199
Query 181 TTATTATGTCACCACCGTCGAAAGCCATCGTCTACGAAGAACACGGCTCTCCCGATTCCG 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 200 --ATTATGTCACCACCGTCAAAAGCCATCGTCTACGAAGAACACGGCTCTCCCGATTCCG 257
Query 241 TCACAAGATTGGTGAATCTCCCGCCGGTGGAAGTGAAAGAAAACGACGTTTGTGTTAAAA 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TCACCAGATTGGTGAATCTCCCGCCGGTGGAAGTGAAAGAAAACGACGTTTGTGTTAAAA 317
Query 301 TGATCGCCGCTCCGATCAATCCCTCCGATATCAATAGAATTGAAGGTGTGTATCCGGTGA 360
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 318 TGATCGCCGCTCCGATCAACCCCTCCGATATCAATCGAATTGAAGGTGTGTATCCGGTGA 377
Query 361 GGCCACCGGTACCAGCGGTTGGTGGTTATGAAGGTGTTGGAGAAGTTTATGCAGTTGGCT 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 378 GGCCACCGGTACCAGCGGTTGGTGGTTATGAAGGTGTTGGTGAAGTTTATGCAGTTGGCT 437
Query 421 CCAAGGTTAATGGTTTTTCTCCTGGTGATTGGGTTATTCCATCTCCACCTTCTTCAGGGA 480
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 438 CCAATGTTAATGGTTTTTCTCCTGGTGATTGGGTCATTCCATCTCCACCTTCTTCAGGGA 497
Query 481 CTTGGCAGACGTATGTTGTGAAGGAAGAGAGTGTGTGGCACAAAATCGATAAAGCGTGTC 540
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 498 CTTGGCAGACTTATGTTGTGAAGGAAGAGAGTGTGTGGCACAAAATCGATAAAGAGTGTC 557
Query 541 CAATGGAGTATGCTGCGACGATTACTGTTAATCCTTTGACGGCTCTAAGGATGCTTGAAG 600
||||||||||||| |||||||||||||||||||| ||||||||| | ||||||||||| |
Sbjct 558 CAATGGAGTATGCAGCGACGATTACTGTTAATCCATTGACGGCTTTGAGGATGCTTGAGG 617
Query 601 ACTTTGTGGTCTTAAATTCTGGAGATTCCGTGGTACAGAATGGTGCAACAAGTATTGTGG 660
|||||||| ||| |||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 618 ACTTTGTGAACTTGAATTCTGGGGATTCTGTTGTACAGAATGGTGCAACAAGTATTGTGG 677
Query 661 GTCAGTGTGTCATTCAGTTGGCTAGACTCCGTGGCATTAGTACTATCAATCTTATTCGTG 720
|||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct 678 GTCAGTGTGTCATTCAGTTGGCAAGACTCCGTGGCATCAGTACCATCAACCTTATTCGTG 737
Query 721 ACAGGGCTGGGTCGGATGAAGCAAGAGAGCAGCTGAAAGCTCTAGGTGCAGATGAAGTGT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 738 ACAGGGCTGGGTCGGATGAAGCAAGAGAGCAGCTGAAAGCTCTAGGTGCAGATGAAGTCT 797
Query 781 TTTTAGAGAGTCAACTGAATGTAAAGAATGTGAAAAGTCTTTTGGGTAACTTACCTGAAC 840
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TTTCAGAGAGTCAACTGAATGTAAAGAATGTGAAAAGTCTTTTGGGTAACTTACCTGAAC 857
Query 841 CAGCTCTGGGATTCAACTGTGTTGGTGGCAATGCTGCCTCTCTTGTGCTCAAATATCTCA 900
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 858 CAGCTCTGGGATTCAACTGTGTTGGTGGCAATGCTGCCTCTCTTGTCCTCAAATATCTCA 917
Query 901 GGGAAGGAGGAACCATGGTAACATATGGTGGGATGTCTAAGAAGCCAATCACTGTGTCAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GGGAAGGAGGAACCATGGTAACATATGGTGGGATGTCTAAGAAGCCAATCACTGTGTCAA 977
Query 961 CAACATCTTTCATCTTTAAGGATTTGGCCTTGAGAGGATTCTGGCTTCAGAGTTGGTTGA 1020
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 978 CAACATCTTTCATCTTTAAGGATTTGGCCTTAAGAGGATTTTGGCTGCAGAGTTGGTTGA 1037
Query 1021 GTATGGGTAAAGTAAAAGAATGCAGAGAGATGATAGACTATCTCCTCGGGCTTGCACGAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 GTATGGGTAAAGTAAAAGAATGCAGAGAGATGATAGACTATCTCCTCGGGCTTGCACGAG 1097
Query 1081 ACGGAAAGCTAAAATATGAAACGGAATTGGTTCCCTTCGACGAGTTCCCTGTTGCTCTCG 1140
|||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1098 ACGGGAAGCTAAAATACGAAACGGAATTGGTTCCCTTCGAAGAGTTCCCTGTTGCTCTCG 1157
Query 1141 ATAAAGCTCTCGGGAAGCTAGGTAGGCAACCTAAACAAGTCATCACATTCTAAAGCTTCC 1200
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1158 ATAAAGCTCTCGGGAAGCTAGGAAGGCAACCTAAACAAGTCATCACATTCTGAAGCTTCC 1217
Query 1201 TTCGCT-TGAGCCATTTAGTAACTGTTACCACT-T----AG------CTATTAATATGAT 1248
|| | | |||||||||||||||||||| ||||| | || ||||||||||||
Sbjct 1218 TTTG-TGTGAGCCATTTAGTAACTGTTGCCACTATCTTTAGTGTTAGCTATTAATATGAC 1276
Query 1249 AATGCATGATGTACTTTATTAT-TCGGTATCTGCTTCTTCTTGTACAATGTATCAGAGAA 1307
|| ||||||||||||||||||| | | ||||||||||||||||| ||||||||||| |||
Sbjct 1277 AAGGCATGATGTACTTTATTATATAG-TATCTGCTTCTTCTTGTCCAATGTATCAG-GAA 1334
Query 1308 AACAATGAGAATGTAGACTGAATAAAA-CCAAAATAAATTATTATGCTCAAGTTCAGATT 1366
|| |||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||
Sbjct 1335 AAAAATGAGAATGTAGACTGAATAAAAACCAAAATAAATCATTATGCTCATGTTCAGATT 1394
Query 1367 GTAACT 1372
||||||
Sbjct 1395 GTAACT 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5