BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484960 Length=3180 Score E Sequences producing significant alignments: (Bits) Value AT3G45780.1 | Symbols: PHOT1, NPH1, JK224, RPT1 | phototropin 1... 4857 0.0 > AT3G45780.1 | Symbols: PHOT1, NPH1, JK224, RPT1 | phototropin 1 | chr3:16816866-16824210 FORWARD LENGTH=3304 Length=3304 Score = 4857 bits (2630), Expect = 0.0 Identities = 2973/3137 (95%), Gaps = 29/3137 (1%) Strand=Plus/Plus Query 1 GAAAAATCGTAGAATAATCTGTTTCTTCCTA-CACAAGTTAACTTGCAAGAGAGAGCTCA 59 ||||||||| || |||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 2 GAAAAATCGAAGGATAATCTGTTTCTTCC-AGCACAAGTTAACTTGCAAGAGAGAGCTCA 60 Query 60 AAGATGGAACCAACAGAGAAACCATCGACCAAACCGTCTTCTCGGACTCTACCTAGAGAC 119 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 AAGATGGAACCAACAGAAAAACCATCGACCAAACCATCTTCTCGGACTCTACCTAGAGAC 120 Query 120 ACTCGTGGCTCTCTCGAAGTATTCAACCCGTCAACTCACCCGGCCCGACCCGATAACCCG 179 |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| Sbjct 121 ACTCGTGGCTCTCTCGAAGTATTCAACCCGTCAACTCAGCTGACCCGACCCGATAACCCG 180 Query 180 GTGTACCGTCCTGAACCACCAACGTGGCAAAACTTGAGTGATCCACGTGGCACCAGTCCT 239 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 181 GTGTTCCGTCCTGAACCACCAGCGTGGCAAAACTTGAGTGATCCACGTGGCACCAGTCCT 240 Query 240 CAACCCCGACCAGAACAAGAACCAGCTCCCTCCAATCCTGTTCGGTCTGATCAAGAAATC 299 |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 241 CAACCCCGACCACAACAAGAACCAGCTCCATCCAACCCTGTTCGGTCTGATCAAGAAATC 300 Query 300 GCTGTCACAACCTCATGGATGGCCCTGAAAGACCCATCACCGGAGAAAATCTCCAAGAAG 359 |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 301 GCTGTCACGACCTCATGGATGGCTCTGAAAGACCCATCACCGGAGACAATCTCCAAGAAG 360 Query 360 ACGATCACCGCCGAGAAACCACAGAAGTCGGCGGTGGCTGCTGAGCAGAGAGCGGCGGAG 419 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 361 ACGATCACCGCCGAGAAACCACAGAAGTCGGCGGTGGCGGCTGAGCAGAGAGCGGCAGAG 420 Query 420 TGGGGATTGGTTTTGAAGACGGATACAAAGACGGGAAAGCCACAAGGAGTGA-GCGTGAG 478 |||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| Sbjct 421 TGGGGATTGGTTTTGAAGACCGATACAAAGACGGGAAAGCCACAAGGAGT-AGGCGTGAG 479 Query 479 GAACTCTGGTGGGACTGAGCATGATCCTAACGGGAAAAAGACTACATCGCAGAGAAACTC 538 |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 480 GAACTCTGGTGGAACTGAGAATGATCCTAACGGGAAAAAGACTACATCGCAGAGAAACTC 539 Query 539 GCAGAATTCTTGCCGGAGCTCCGGCGAGATGTCCGACGGAGATG-TCGTCGGAGGGA-GA 596 ||| || ||||||||||||||||| |||||||| |||||||||| || ||| |||| || Sbjct 540 GCAAAACTCTTGCCGGAGCTCCGGTGAGATGTCGGACGGAGATGTTC-CCGGCGGGAGGA 598 Query 597 GGAGGGATTCCAAGAGTATCGGAAGATCTGAAAGATGCGTTGTCAACGTTTCAACAAACG 656 | |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 599 -GTGGGATTCCAAGAGTATCGGAAGATCTAAAAGATGCGTTGTCGACGTTTCAACAAACG 657 Query 657 TTTGTGGTTTCAGATGCTACAAAACCTGATTACCCGATTATGTATGCAAGTGCTGGTTTC 716 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 658 TTTGTGGTCTCAGATGCTACAAAACCTGATTATCCGATTATGTATGCAAGTGCTGGTTTC 717 Query 717 TTCAATATGACCGGTTACACTTCCAAAGAGGTCGTCGGCAGAAACTGCCGATTTTTACAA 776 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 718 TTCAATATGACTGGTTACACTTCCAAAGAAGTCGTCGGCAGAAACTGCCGATTTTTACAA 777 Query 777 GGATCAGGGACAGATGCTGATGAGTTAGCGAAGATCAGAGAGACATTAGCTGCTGGTAAC 836 |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||| Sbjct 778 GGATCAGGTACAGATGCAGATGAGTTAGCAAAGATAAGAGAGACATTAGCTGCTGGTAAC 837 Query 837 AATTATTGTGGACGTTTATTGAATTACAAGAAAGATGGGACCTCTTTTTGGAATCTTCTC 896 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 AATTATTGTGGGCGTATATTGAATTACAAGAAAGATGGGACCTCTTTTTGGAATCTTCTC 897 Query 897 ACGATTGCTCCCATTAAAGACGAGAGTGGCAAAGTCCTCAAATTTATCGGAATGCAAGTG 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 ACGATTGCTCCCATTAAAGACGAGAGTGGCAAAGTCCTCAAATTTATCGGAATGCAAGTG 957 Query 957 GAGGTGAGCAAGCACACTGAAGGGGCCAAAGAAAAGAG-TTTGAGGCCCAATGGGCTTCC 1015 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 958 GAGGTGAGCAAGCACACTGAAGGGGCCAAAGAAAAG-GCTTTGAGGCCCAATGGGCTTCC 1016 Query 1016 GGAATCTCTGATTCGATATGATGCCCGCCAAAAAGATATAGCTACGAACTCAGTGACAGA 1075 |||||||||||||||||| |||||||||||||||||||| || || |||||||||||||| Sbjct 1017 GGAATCTCTGATTCGATACGATGCCCGCCAAAAAGATATGGCGACAAACTCAGTGACAGA 1076 Query 1076 GCTAGTGGAGGCGGTGAAGAGACCTCGAGCACTAAGCGAATCGACGAATCTCCATCCCTT 1135 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1077 GCTAGTAGAGGCGGTGAAGAGACCTCGGGCACTAAGCGAATCGACGAATCTCCATCCCTT 1136 Query 1136 CATGACAAAATCGGAGAGCGATGAACTACCGAAAAAACCTGCTCGGCGAATGTCCGAAAA 1195 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1137 CATGACAAAATCGGAGAGCGATGAACTTCCGAAAAAACCAGCTCGGCGAATGTCCGAAAA 1196 Query 1196 TGTTGTTCCGTCAGGCCGAAGAAACTCTGGCGGCGGAAGAAGAAACTCGATGCAGCGAAT 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 TGTTGTTCCGTCAGGCCGAAGAAACTCTGGCGGCGGAAGAAGAAACTCGATGCAGCGAAT 1256 Query 1256 CAACGAAATTCCCGAGAAGAAATCGAGGAAATCTTCTCTTTCCTTTATGGGGATTAAGAA 1315 |||||||||||||||||| ||||| || |||||||| |||||||| |||||||| ||||| Sbjct 1257 CAACGAAATTCCCGAGAAAAAATCTAGAAAATCTTCCCTTTCCTTCATGGGGATCAAGAA 1316 Query 1316 GAAGAGTGAATCTTTGGATGAATCTATAGACGATGGATTTATAGAGTATGGAGAAGAAGA 1375 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 GAAGAGCGAATCTTTGGATGAATCTATAGACGATGGATTTATAGAGTATGGAGAAGAAGA 1376 Query 1376 CGATGAAATTAGTGACAGAGACGAGAGACCAGAGAGTGTGGATGATAAAGTGAGACAAAA 1435 |||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1377 CGATGAGATTAGTGATAGGGACGAGAGACCTGAGAGTGTGGATGATAAAGTGAGACAAAA 1436 Query 1436 GGAAATGAGAAAGGGTATTGATCTCGCTACTACACTGGAACGTATCGAGAAGAATTTCGT 1495 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1437 GGAAATGAGAAAGGGTATTGATCTAGCTACTACACTCGAACGTATCGAGAAGAATTTCGT 1496 Query 1496 CATCACTGATCCTCGGCTTCCCGATAATCCCATTATTTTTGCATCTGATAGTTTCTTGGA 1555 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 CATCACTGATCCTAGGCTTCCCGATAATCCCATTATTTTTGCATCTGATAGTTTCTTGGA 1556 Query 1556 GCTCACGGAATATAGCCGTGAAGAAATCCTTGGCAGAAATTGCAGGTTTCTGCAAGGTCC 1615 ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct 1557 GCTCACGGAATATAGCCGTGAAGAAATTCTTGGAAGAAATTGCAGGTTTCTACAAGGTCC 1616 Query 1616 AGAGACTGATCTGACCACGGTGAAGAAGATTCGAAATGCTATTGATAACCAAACCGAAGT 1675 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1617 AGAGACTGATCTAACCACAGTGAAGAAGATTCGAAATGCTATTGATAACCAAACCGAAGT 1676 Query 1676 GACGGTTCAGCTCATCAACTACACTAAAAGCGGAAAGAAGTTTTGGAACATTTTCCACTT 1735 ||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 1677 GACAGTTCAGCTCATCAACTACACCAAGAGCGGAAAGAAGTTCTGGAACATTTTCCACTT 1736 Query 1736 GCAACCTATGCGTGATCAAAAGGGAGAAGTACAATACTTTATTGGAGTTCAACTAGACGG 1795 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1737 GCAACCTATGCGTGATCAGAAGGGAGAAGTACAATACTTTATTGGAGTTCAACTAGACGG 1796 Query 1796 GAGCAAGCACGTAGAGCCAGTTCGCAATGTCATTGAAGAAACCAAAGTGAAAGAGGGGGA 1855 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| || Sbjct 1797 GAGCAAGCACGTAGAACCAGTTCGCAATGTCATTGAAGAAACCGCAGTGAAAGAGGGAGA 1856 Query 1856 AGAGCTGGTGAAGAAAACAGCTGTAAATATCGATGAAGCAGTTCGAGAACTTCCTGATGC 1915 ||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1857 AGACCTGGTGAAAAAAACAGCTGTGAATATCGATGAAGCGGTTCGAGAACTTCCTGATGC 1916 Query 1916 CAACATGAGACCAGAGGATTTATGGGCAAACCACTCAAAGGTTGTTCATTGTAAGCCTCA 1975 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1917 CAACATGACACCAGAGGATTTATGGGCAAACCACTCAAAGGTTGTTCATTGTAAGCCTCA 1976 Query 1976 TAGGAAAGATTCATCACCATGGATAGCTATCCAAAAGGTATTGGAAAGTGGTGAACCGAT 2035 |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1977 CAGGAAAGATTCACCACCATGGATAGCTATCCAAAAGGTGTTGGAAAGTGGTGAACCGAT 2036 Query 2036 TGGTTTGAAGCATTTCAAACCGGTGAAGCCTTTGGGTTCCGGTGATACTGGAAGTGTGCA 2095 ||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||| Sbjct 2037 TGGTTTGAAGCATTTCAAACCGGTGAAACCTTTGGGTTCTGGTGACACAGGAAGTGTGCA 2096 Query 2096 TCTAGTGGAACTCGTTGGAACGGATCAGTTGTTTGCAATGAAAGCAATGGACAAGGCTGT 2155 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2097 TCTAGTGGAACTCGTTGGAACAGATCAGTTGTTTGCAATGAAAGCAATGGACAAGGCTGT 2156 Query 2156 CATGCTTAACCGAAACAAAGTGCATAGAGCTAGAGCTGAGAGAGAAATCCTCGATTTGCT 2215 |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct 2157 TATGCTTAACCGAAACAAAGTACATAGAGCTAGAGCTGAGAGAGAGATCCTAGATTTGCT 2216 Query 2216 TGACCATCCTTTTCTTCCCGCACTCTACGCTTCATTTCAGACAAAAACACATATATGTCT 2275 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 2217 TGACCATCCTTTTCTTCCTGCACTCTACGCTTCTTTTCAGACAAAAACACATATATGTCT 2276 Query 2276 CATTACAGATTACTATCCAGGAGGAGAACTCTTCATGCTCCTAGATCGACAACCTAGGAA 2335 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2277 TATAACAGATTACTATCCAGGAGGAGAACTCTTCATGCTCCTAGATCGACAACCTAGGAA 2336 Query 2336 GGTTCTCAAGGAAGATGCCGTAAGATTCTATGCTGCTCAAGTTGTCGTTTCACTCGAGTA 2395 ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 2337 GGTTCTCAAAGAAGATGCTGTAAGATTCTATGCTGCTCAAGTTGTCGTTGCACTCGAGTA 2396 Query 2396 TCTTCACTG----G-A-TAATTTACCGAGACTTGAAACCGGAAAACGTGTTAATCCAAGG 2449 ||||||||| | | ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2397 TCTTCACTGTCAAGGAATAATTTACCGAGACTTGAAACCGGAAAACGTTTTAATCCAAGG 2456 Query 2450 CAATGGCGATATTTCCTTATCGGATTTCGA-CTTGTCTTGCTTGACATCTTGCAAACCTC 2508 |||||||||||| || || |||||||| || || |||||||||||||||||||||||||| Sbjct 2457 CAATGGCGATATCTCTTTGTCGGATTTTGATCT-GTCTTGCTTGACATCTTGCAAACCTC 2515 Query 2509 AGCTGTTGATTCCGAGTATAGATGAGAAGAAGAAGAAAAAGCAACAAAAGAGTCAACAAA 2568 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2516 AGCTGTTGATTCCGAGTATAGACGAGAAGAAGAAGAAAAAGCAACAAAAGAGTCAACAAA 2575 Query 2569 CTCCAATCTTCATGGCTGAACCAATGCGTGCATCAAACTCATTTGTTGGCACTGAAGAGT 2628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2576 CTCCAATCTTCATGGCTGAACCAATGCGTGCATCAAACTCATTTGTTGGCACTGAAGAGT 2635 Query 2629 ATATTGCTCCGGAAATTATATCCGGGGCAGGACATACGAGTGCAGTGGACTGGTGGGCTC 2688 | ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 2636 ACATTGCTCCGGAAATTATATCCGGAGCAGGACATACGAGTGCAGTAGACTGGTGGGCTC 2695 Query 2689 TTGGTATCCTTATGTATGAAATGTTATACGGATACACTCCGTTTAGAGGAAAAACCCGAC 2748 ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 2696 TTGGTATACTTATGTATGAAATGTTATACGGATACACTCCTTTTAGAGGAAAAACAAGAC 2755 Query 2749 AGAAGACTTTCACCAATGTTCTTCAGAAAGATCTCAAGTTTCCAGCTAGCATTCCTGCAA 2808 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2756 AGAAGACTTTCACCAATGTTCTTCAAAAAGATCTCAAGTTTCCAGCTAGCATTCCTGCAA 2815 Query 2809 GTCTTCAAGTGAAACAACTGATCTTTAGGCTCTTACAACGAGATCCGAAGAAAAGATTAG 2868 |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 2816 GTCTTCAAGTGAAACAGCTGATTTTTAGGCTGTTACAACGAGATCCGAAGAAAAGACTAG 2875 Query 2869 GCTGTTTTGAAGGAGCAAACGAAGTCAAGAAACATTCTTTCTTCAAAGGCATAAATTGGG 2928 | ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 2876 GTTGTTTTGAAGGAGCAAATGAAGTCAAGCAACATTCTTTCTTCAAAGGCATAAATTGGG 2935 Query 2929 CTCTTATTCGATGCACGAATGCTCCGGAGCTAGAGACTCCGATATTTTCTGGTGAAGCTG 2988 |||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||| Sbjct 2936 CTCTGATTCGATGCACGAACCCTCCAGAGCTCGAGACTCCGATATTTTCTGGTGAAGCTG 2995 Query 2989 AAAACGGAGAGAAAGTTGTTGATCCTGACCTGGAAGATCTGCAAACAAATGTTTTTTGAA 3048 |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 2996 AAAACGGAGAGAAAGTTGTTGATCCTGAGCTAGAAGATCTGCAAACAAATGTTTTTTGAG 3055 Query 3049 ATTTGAATTATATGTTTCTTGTTTTCTCTTTACCGATTTCAAGAATTGTTTGAAACTCTT 3108 ||||| | || | |||| | ||||||| ||| | | | |||||||||||||||||| Sbjct 3056 ATTTGGACTAAACGTTTATCGTTTTCT-TTT-C--A----A-GAATTGTTTGAAACTCTT 3106 Query 3109 TGCTTTTC-AAAAATCT 3124 || || || |||||||| Sbjct 3107 TG-TTCTCCAAAAATCT 3122 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 158176371279 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5