BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484985
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46060.1 | Symbols: ARA3, ARA-3, ATRABE1C, ATRAB8A, RAB8A | ... 1657 0.0
AT5G59840.1 | Symbols: | Ras-related small GTP-binding family ... 815 0.0
AT1G06400.1 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-re... 54.7 2e-06
> AT3G46060.1 | Symbols: ARA3, ARA-3, ATRABE1C, ATRAB8A, RAB8A
| RAB GTPase homolog 8A | chr3:16917589-16920018 FORWARD LENGTH=1132
Length=1132
Score = 1657 bits (897), Expect = 0.0
Identities = 1044/1107 (94%), Gaps = 41/1107 (4%)
Strand=Plus/Plus
Query 1 CTCTCTTTTTCTGCGCACTCCTTCGTTTCCAACTAACGTGCGCAGTGAATCCTATCGTGC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 CTCTCTTTTTCTGCGCACTCCTTCGTTTCCAACTAACGTGCGCAGTGTATCCTATCGTGC 60
Query 61 ACGCGAAGCAGACG-A-AAGAAGTAAAATAGAAGAAGCCGGGaaaaaaaaGCTAAATCGG 118
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 ACGCGAAGCAGACGAAGAAGAAGTAAAATAGAAGAAGCCGGGAAACAAAAGCTAAATCGG 120
Query 119 G-ACTGGCGCATTTTAGCCGTCCGCCATAACCTTCGCTCTTCGCTCTCTGATTCTTCCGA 177
| ||||||||||||||| |||||||||||| | ||||||||||||||||||||||
Sbjct 121 GAACTGGCGCATTTTAGTCGTCCGCCATAA------C-CTTCGCTCTCTGATTCTTCCGA 173
Query 178 TTACATCGGTTTTCTTCTC-CGTCCGATTCAATGGCTGCTCCTCCTGCTAGAGCCAGAGC 236
||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||
Sbjct 174 TTACATCGGTTTTCTTCTCTC-TCCGATTCAATGGCTGCTCCACCTGCTAGAGCCAGAGC 232
Query 237 TGATTACGATTATCTCATTAAGCTTCTTTTGATTGGAGATAGCGGTGTTGGTAAAAGTTG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TGATTACGATTATCTCATTAAGCTTCTTTTGATTGGAGATAGCGGTGTTGGTAAAAGTTG 292
Query 297 TCTTCTTCTACGTTTCTCTGATGGATCTTTCACCACTAGCTTCATTACCACCATTGGTAT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 293 TCTTCTTCTACGTTTCTCTGATGGATCTTTCACCACTAGCTTCATTACCACCATTGGCAT 352
Query 357 TGACTTTAAGATAAGAACGATTGAGCTTGATGGTAAACGTATCAAGCTTCAGATTTGGGA 416
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 353 TGACTTTAAGATAAGAACGATTGAGCTTGACGGTAAACGTATCAAGCTTCAGATTTGGGA 412
Query 417 TACTGCTGGTCAAGAGCGGTTTCGGACTATCACCACTGCTTATTACCGTGGGGCAATGGG 476
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TACCGCTGGTCAAGAGCGGTTTCGGACTATCACCACTGCTTATTACCGTGGGGCAATGGG 472
Query 477 CATTTTGCTGGTGTATGATGTCACAGACGAGTCATCCTTCAACAACATTAGGAACTGGAT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CATTTTGCTGGTGTATGATGTCACAGACGAGTCATCCTTCAACAACATTAGGAACTGGAT 532
Query 537 TCGTAACATCGAACAGCATGCTTCAGATAATGTTAACAAGATCTTGGTAGGGAACAAGGC 596
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 533 TCGTAATATCGAACAGCATGCTTCGGATAATGTTAACAAGATCTTGGTAGGGAACAAGGC 592
Query 597 TGACATGGATGAAAGCAAGAGGGCGGTACCTACAGCAAAGGGTCAAGCTCTTGCTGATGA 656
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 593 TGACATGGATGAAAGCAAGAGGGCAGTACCTACAGCAAAGGGTCAGGCTCTTGCTGATGA 652
Query 657 GTACGGAATTAAGTTCTTTGAAACAAGTGCCAAGACAAACCTAAACGTGGAAGAAGTTTT 716
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GTACGGAATTAAGTTCTTCGAAACAAGTGCCAAGACAAACCTAAACGTGGAAGAAGTTTT 712
Query 717 CTTCTCAATAGGGAGGGACATTAAGCAGAGGCTTTCAGACACCGACTCGAGGGCAGAGCC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CTTCTCAATAGGGAGGGACATTAAGCAGAGGCTTTCAGACACCGACTCGAGGGCAGAGCC 772
Query 777 TGCAACTATCAAGATAAGCCAAACGGACCAGGCAGCTGGAGCCGGGCAGGCCACACAGAA 836
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 773 TGCAACGATCAAGATAAGCCAAACGGACCAAGCAGCTGGAGCAGGGCAGGCCACACAGAA 832
Query 837 ATCTGCATGCTGTGGAACTTAAAA---TTT-AA--GTC--G---aa----aaaaa-GTTT 880
|||||||||||||||||||||||| ||| || || | || ||||| ||||
Sbjct 833 ATCTGCATGCTGTGGAACTTAAAAAAGTTTTAAAAGTGAAGTTTAAGTCGAAAAAAGTTT 892
Query 881 GGGG-TGAAGTGAAAAAACTAAGAT--CGTTGGGTGCTTTTGTAATTTTT-GTTTTATGC 936
|||| |||||||||||| ||||||| |||||||||||| |||||||||| |||||||||
Sbjct 893 GGGGGTGAAGTGAAAAA-CTAAGATATCGTTGGGTGCTTATGTAATTTTTTGTTTTATGC 951
Query 937 CAACATTTCTGATTCGTTCT---AAATTGTCCTTCCTATTTGTACGAAGGTTTAATCGAA 993
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 952 CAACAATTCTGATTCGTTCTTCTAAATTGTCCTTCCTATTTGTACGAAGGTTTAATCGAA 1011
Query 994 ACATGTAttttttttCTTTCTCTGTTGCTGATTTTTAATGACGGTGACTGAATTGTT-AT 1052
|| ||||||||| |||| ||| || ||||||||| |||||||||||||||||||| ||
Sbjct 1012 ACTTGTATTTTT---CTTT-TCTATTACTGATTTTTTATGACGGTGACTGAATTGTTTAT 1067
Query 1053 GTTGGTCATCACTTCTCTCTATATATC 1079
|||||||||||||||||||||||||||
Sbjct 1068 GTTGGTCATCACTTCTCTCTATATATC 1094
> AT5G59840.1 | Symbols: | Ras-related small GTP-binding family
protein | chr5:24107215-24109251 REVERSE LENGTH=967
Length=967
Score = 815 bits (441), Expect = 0.0
Identities = 588/661 (89%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 199 TCCGATTCAATGGCTGCTCCTCCTGCTAGAGCCAGAGCTGATTACGATTATCTCATTAAG 258
|||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||||
Sbjct 73 TCCGATTCGATGGCTGCTCCACCTGCTAGAGCTAGAGCCGATTATGATTATCTCATTAAG 132
Query 259 CTTCTTTTGATTGGAGATAGCGGTGTTGGTAAAAGTTGTCTT-CTTCTACGTTTCTCTGA 317
|||||| | || || |||||||||||||||||||||||| || |||||| | ||||||||
Sbjct 133 CTTCTTCTCATCGGTGATAGCGGTGTTGGTAAAAGTTGT-TTGCTTCTAAGGTTCTCTGA 191
Query 318 TGGATCTTTCACCACTAGCTTCATTACCACCATTGGTATTGACTTTAAGATAAGAACGAT 377
||| |||||||||||||||||||| || |||||||||||||| |||||||||||||| ||
Sbjct 192 TGGCTCTTTCACCACTAGCTTCATCACTACCATTGGTATTGATTTTAAGATAAGAACTAT 251
Query 378 TGAGCTTGATGGTAAACGTATCAAGCTTCAGATTTGGGATACTGCTGGTCAAGAGCGGTT 437
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 252 TGAGCTTGATGGCAAACGTATCAAGCTTCAGATTTGGGACACTGCTGGTCAAGAACGTTT 311
Query 438 TCGGACTATCACCACTGCTTATTACCGTGGGGCAATGGGCATTTTGCTGGTGTATGATGT 497
||| || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 312 TCGAACCATCACCACTGCTTATTACCGCGGGGCAATGGGGATTTTACTGGTGTATGATGT 371
Query 498 CACAGACGAGTCATCCTTCAACAACATTAGGAACTGGATTCGTAACATCGAACAGCATGC 557
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||
Sbjct 372 CACAGACGAGTCATCCTTCAACAACATTAGAAACTGGATTCGTAATATTGAACAGCACGC 431
Query 558 TTCAGATAATGTTAACAAGATCTTGGTAGGGAACAAGGCTGACATGGATGAAAGCAAGAG 617
|||||||||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||||||
Sbjct 432 TTCAGATAATGTCAACAAAATCTTGGTAGGAAACAAAGCTGATATGGACGAGAGCAAGAG 491
Query 618 GGCGGTACCTACAGCAAAGGGTCAAGCTCTTGCTGATGAGTACGGAATTAAGTTCTTTGA 677
||| || || | | ||||||||||||| |||||||| || || ||||| |||||||||||
Sbjct 492 GGCTGTGCCAAAATCAAAGGGTCAAGCACTTGCTGACGAATATGGAATCAAGTTCTTTGA 551
Query 678 AACAAGTGCCAAGACAAACCTAAACGTGGAAGAAGTTTTCTTCTCAATAGGGAGGGACAT 737
|||||||||||| || || || || |||||||||||||||||||| |||| | ||||||
Sbjct 552 AACAAGTGCCAAAACTAATCTGAATGTGGAAGAAGTTTTCTTCTCCATAGCAAAGGACAT 611
Query 738 TAAGCAGAGGCTTTCAGACACCGACTCGAGGGCAGAGCCTGCAACTATCAAGATAAGCCA 797
|||||||| || | || || ||||| || |||||||||||||| |||||||| |||||
Sbjct 612 AAAGCAGAGACTCGCTGATACTGACTCTAGAGCAGAGCCTGCAACGATCAAGATCAGCCA 671
Query 798 AACGGACCAGGCAGCTGGAGCCGGGCAGGCCACACAGAAATCTGCATGCTGTGGAACTTA 857
||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||
Sbjct 672 AACAGACCAGGCTGCTGGAGCCGGACAGGCCACACAGAAGTCTGCATGCTGTGGAAGTTA 731
Query 858 A 858
|
Sbjct 732 A 732
> AT1G06400.1 | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-related
small GTP-binding family protein | chr1:1950844-1952785
REVERSE LENGTH=995
Length=995
Score = 54.7 bits (29), Expect = 2e-06
Identities = 32/33 (97%), Gaps = 1/33 (3%)
Strand=Plus/Plus
Query 400 AAGCTTCAGATTTGGGATACTGCTGGTCAAGAG 432
|||| ||||||||||||||||||||||||||||
Sbjct 287 AAGC-TCAGATTTGGGATACTGCTGGTCAAGAG 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54015786420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5