BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485002 Length=921 Score E Sequences producing significant alignments: (Bits) Value AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 1367 0.0 > AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062 Length=1062 Score = 1367 bits (740), Expect = 0.0 Identities = 879/940 (94%), Gaps = 34/940 (4%) Strand=Plus/Plus Query 6 ATTGGAGCAATGGAGATTGATAGAGAAGATGGAAGAACGCCGAATCAGCTGAGACCTCTT 65 |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 114 ATTGTAGCAATGGAGATTGATAGAGAAGATGGAAGAACACCAAATCAGCTGAGACCTCTT 173 Query 66 GCTTGTTCCCGTAATATCCTTCATCGTCCTCATGGCTCTGCTAGTTGGTCACAAGGGGAT 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 GCTTGTTCCCGTAATATCCTTCATCGTCCTCATGGCTCTGCTAGTTGGTCACAAGGGGAT 233 Query 126 ACCAAAGTTCTAGCTGCAGTTTATGGACCTAAAGCAGGAACGAAGAAGAATGAAAATGCT 185 || |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| Sbjct 234 ACAAAAGTTCTAGCTGCGGTTTATGGACCTAAAGCAGGAACGAAAAAGAACGAAAATGCT 293 Query 186 GAGAAGGCTTGTTTTGAAGTCATATGGAAGCCTAAAACTGGGCAGATTGGAAAAGTAGAA 245 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct 294 GAGAAGGCTTGTTTTGAAGTCATATGGAAGCCTAAATCCGGGCAGATTGGAAAAGTTGAA 353 Query 246 AAGGAGTATGAGATGATAATGAAAAGGACAATACAGAGTATTTGTGTTTTGACAGTTAAT 305 |||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| Sbjct 354 AAGGAGTATGAGATGATATTGAAAAGGACGATACAGAGTATTTGTGTTTTGACTGTTAAT 413 Query 306 CCAAATACCACCACCTCAGTGATAATTCAGGTTGTACATGATGATGGTTCTCTTCTACCG 365 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 414 CCAAATACCACCACCTCAGTGATAATTCAGGTTGTGCATGATGATGGTTCTCTTCTACCA 473 Query 366 TGTGCGATAAATGCAGCATGTGCAGCGCTTGTCGATGCAGGAATCCCTATGAAGCATCTC 425 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 TGTGCGATAAATGCAGCATGTGCAGCGCTTGTCGATGCAGGAATCCCTATGAAGCATCTG 533 Query 426 GCTGTTGCTATATGTTGTTGCCTGGCTGATAATGGATATCTCGTACTCGATCCAAACAAG 485 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 534 GCTGTTGCTATATGCTGTTGCCTGGCTGAGAATGGATATCTCGTACTCGATCCAAACAAG 593 Query 486 CTTGAAGAAAAGAAAATGACGGCCTTTGCTTATTTAGTCTTTCCAAATACAACTCTCTCT 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 CTTGAAGAAAAGAAAATGACGGCCTTTGCTTATTTAGTCTTTCCAAATACAACTCTCTCT 653 Query 546 GTTCTTCCGGAAGGATCATCAGTAGCGGAAGGCGAGCCAGTAGAGCATGGGATCATTACA 605 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 654 GTTCTTCCGGAAGGGTCATCAGTAGCGGAAGGCGAGCCAGTAGAGCATGGGATCATCACA 713 Query 606 TCAGTTACCCATGGAGTAATGTCAGTGGACGATTATTTCCTGTGTGTAGAGAACGGCCGT 665 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 TCAATTACACATGGAGTAATGTCAGTGGACGATTATTTCCTGTGTGTAGAGAACGGCCGT 773 Query 666 GCTGCTACGGCTAGTTTATCTGCATTTTTTAGAAAGAACTTCCAACAAAGCCAAAAAGAT 725 |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 774 GCTGCTACGGCTAGTTTATCTGCATTTTTTAGAAAGAACTTCCAACAAAG---------T 824 Query 726 TCATCCAAGGCCGGGTAAAGAGCACAAATTCATAATGGTTTGCATGAGATTTTGA--CGG 783 ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 825 TCATCCAAGGCTGGGTAAA-AGCACAAATTCATAATGGTTTGCATGAGATTTTGAAACGG 883 Query 784 TTTCATATTTCTCCTGTTGTAGCTTTTATAGAATCCTTATCGTCGATGTGTCTAATCAAA 843 ||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 884 TTTCATATTACTCCTGTTGTAGCTTTGATAGAATCCTTGTCGTCTATGTGTCTAATCAAA 943 Query 844 A-TC------TAGT-----AT---C--GT-T-A---GATATGTGAACAGATGAACCTCGT 881 | || |||| || | || | | |||||||||||||||||||||||| Sbjct 944 AATCAAAAGCTAGTGGCCTATTATCTAGTATCATTAGATATGTGAACAGATGAACCTCGT 1003 Query 882 ATCTTTAATACAAATGGTAGCCATGGTCAGAGCTATTGAT 921 |||||||||||||||||||||||||||||||||||||||| Sbjct 1004 ATCTTTAATACAAATGGTAGCCATGGTCAGAGCTATTGAT 1043 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45009795712 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5