BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485004 Length=621 Score E Sequences producing significant alignments: (Bits) Value AT3G46230.1 | Symbols: ATHSP17.4, HSP17.4 | heat shock protein ... 911 0.0 AT1G53540.1 | Symbols: | HSP20-like chaperones superfamily pro... 534 3e-151 > AT3G46230.1 | Symbols: ATHSP17.4, HSP17.4 | heat shock protein 17.4 | chr3:16984118-16984841 REVERSE LENGTH=724 Length=724 Score = 911 bits (493), Expect = 0.0 Identities = 580/622 (93%), Gaps = 6/622 (1%) Strand=Plus/Plus Query 1 AAACGATGTCTCTAATTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTGTTCGACCCAT 60 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 104 AAACGATGTCTCTAGTTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTGTTCGACCCAT 163 Query 61 TTTCACTAGACGTATGGGATCCATTCGAAGGATTCATGACGCCTGGGTTGACAAACGCAC 120 |||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| Sbjct 164 TTTCACTAGACGTATGGGATCCGTTCGAAGGATTCTTGACGCCCGGGTTGACAAACGCAC 223 Query 121 CTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGGGAGACACCTGAGG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 224 CTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGGGAGACACCTGAAG 283 Query 181 CGCACGTGTTCAAGGCGGACTTGCCGGGGCTTAAGAAGGAAGAGGTGAAGGTGGAGGTTG 240 |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 284 CGCATGTGTTCAAGGCGGACGTGCCTGGGCTTAAGAAGGAAGAGGTGAAGGTGGAGGTTG 343 Query 241 AAGATGGGAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAATGAAGAGAAGAGTG 300 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 344 AAGATGGTAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAATGAAGAGAAGAGTG 403 Query 301 ACA-AGTGGCACCGTGTGGAGAGGTCGAGTGGGAAGTTCATTAGGAGGTTTAGATTGCCG 359 ||| | ||||||||||||||| |||| |||||||||||||| ||||||||| | ||||| Sbjct 404 ACACA-TGGCACCGTGTGGAGCGGTCAAGTGGGAAGTTCATGAGGAGGTTTCGGTTGCCA 462 Query 360 GAGAATGCGAAGGTGGAGGAAGTGAAGGCGAGTATGGAGAACGGTGTGTTGTCCGTTACG 419 |||||||| |||||||||||||| ||||||||||||||||| || |||||||| |||||| Sbjct 463 GAGAATGCAAAGGTGGAGGAAGTAAAGGCGAGTATGGAGAATGGGGTGTTGTCGGTTACG 522 Query 420 GTGCCGAAAGTGCCGGAGAGTAAGCCCGAGGTCAAGTCCATTGATATCTCTGGTTAAGAG 479 ||||||||||| | |||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 523 GTGCCGAAAGTTCAGGAGAGTAAGCCGGAGGTCAAGTCCGTTGATATCTCTGGTTAAGAG 582 Query 480 GAACTTTGAAGTTGGAAAGCTAAAGACAACAATGTGTGATAGTGTAAAATAAATAGTGCG 539 ||||| ||||||||||||||| |||||| ||| ||||||||||| |||||||| ||||| Sbjct 583 GAACTCTGAAGTTGGAAAGCTTAAGACAGTAATATGTGATAGTGTGAAATAAATGGTGCG 642 Query 540 AATTTCCTTTCTGCTTCTTTCTCCTGTAATCACCGATCTCGTTGTATCGATATAAGTAAA 599 | |||||||||| ||| ||||| |||||||||| ||||||||||||| |||||||||| Sbjct 643 ACTTTCCTTTCTTCTT-TTTCT--TGTAATCACCAATCTCGTTGTATCAATATAAGTAA- 698 Query 600 TCTTAATAAAAGAGTGTTTTGA 621 || ||||||||||||||||||| Sbjct 699 TCGTAATAAAAGAGTGTTTTGA 720 > AT1G53540.1 | Symbols: | HSP20-like chaperones superfamily protein | chr1:19980462-19981109 FORWARD LENGTH=648 Length=648 Score = 534 bits (289), Expect = 3e-151 Identities = 419/483 (87%), Gaps = 4/483 (1%) Strand=Plus/Plus Query 1 AAACGATGTCTCTAATTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTGTTCGACCCAT 60 ||||||||||||||||||| ||| | || ||||| ||||||||||||| ||||| || | Sbjct 44 AAACGATGTCTCTAATTCCAAGCATCTTCGGAGGAAGAAGAACAAACGTTTTCGATCCGT 103 Query 61 TTTCACTAGACGTATGGGATCCATTCGAAGGATTCATGACGCC-T--GGGTTGACAAACG 117 | || || || || | ||||| |||||||| ||| ||||||| | || ||| |||||| Sbjct 104 TCTCGCTGGATGTTTTCGATCCGTTCGAAGGTTTCTTGACGCCGTCAGGATTGGCAAACG 163 Query 118 CACCTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGGGAGACACCTG 177 |||| || | ||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 164 CACCCGCTATGGATGTGGCAGCGTTCACAAACGCTAAAGTGGATTGGAGGGAGACACCTG 223 Query 178 AGGCGCACGTGTTCAAGGCGGACTTGCCGGGGCTTAAGAAGGAAGAGGTGAAGGTGGAGG 237 |||||||||||||||||||||| || ||||| || | ||||||||||||||| ||||||| Sbjct 224 AGGCGCACGTGTTCAAGGCGGATTTACCGGGACTGAGGAAGGAAGAGGTGAAAGTGGAGG 283 Query 238 TTGAAGATGGGAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAATGAAGAGAAGA 297 |||| ||||| ||||||||||||||||| || |||||||||| ||||||||||||||||| Sbjct 284 TTGAGGATGGCAACATACTTCAGATAAGTGGAGAGAGGAGCAATGAGAATGAAGAGAAGA 343 Query 298 GTGACAAGTGGCACCGTGTGGAGAGGTCGAGTGGGAAGTTCATTAGGAGGTTTAGATTGC 357 |||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| Sbjct 344 ATGACAAGTGGCACCGTGTGGAGCGGTCGAGTGGGAAGTTCACGAGGAGGTTTAGGCTGC 403 Query 358 CGGAGAATGCGAAGGTGGAGGAAGTGAAGGCGAGTATGGAGAACGGTGTGTTGTCCGTTA 417 |||||||||| ||| |||||||| | || || |||||||| || ||||||||||| |||| Sbjct 404 CGGAGAATGCTAAGATGGAGGAAATCAAAGCCAGTATGGAAAATGGTGTGTTGTCGGTTA 463 Query 418 CGGTGCCGAAAGTGCCGGAGAGTAAGCCCGAGGTCAAGTCCATTGATATCTCTGGTTAAG 477 | ||||| || ||||| |||| ||||| ||||| |||||||||||||||||||||||| Sbjct 464 CCGTGCCCAAGGTGCCAGAGAAAAAGCCAGAGGTTAAGTCCATTGATATCTCTGGTTAA- 522 Query 478 AGG 480 ||| Sbjct 523 AGG 525 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29939551612 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5