BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485014
Length=377
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 320 6e-87
AT5G59613.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 231 3e-60
> AT3G46430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion, mitochondrial respiratory chain
complex III; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G59613.2); Has 51 Blast
hits to 51 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:17087594-17088753
FORWARD LENGTH=517
Length=517
Score = 320 bits (173), Expect = 6e-87
Identities = 266/306 (87%), Gaps = 26/306 (8%)
Strand=Plus/Plus
Query 22 AGAGAGAGAG-AAATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAA 80
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AGAGAGAGAGAAAATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAA 140
Query 81 ACGTTGTTGGCCATTCCTCACTGGATTCGCCTTCACCGGCGTTCTCATCACCAAGTTAAC 140
|||||| |||||||||||||| || |||||| ||||||||||||||||||||||| ||||
Sbjct 141 ACGTTGCTGGCCATTCCTCACCGGTTTCGCCGTCACCGGCGTTCTCATCACCAAGCTAAC 200
Query 141 CGCCGGACTCACTGAGGAAGATGCGAAGAACTCCAAGTTCGTTCAACAACACAGAAGGTG 200
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 201 CGCCGGACTCACTGAGGAAGATGCTAAGAACTCCAAGTTCGTCCAGCAACACAGAAGGTG 260
Query 201 ATGCA---AAG-----TGTAGAAGCTGAGAAGGCATA--G-T--GG-A-T---G------ 236
|| || ||| |||||||||||| |||||||| | | || | | |
Sbjct 261 ATTCACTGAAGCAAAATGTAGAAGCTGACAAGGCATATAGATTTGGGACTATAGTGAATG 320
Query 237 CTTCAGATTTGAAACATGGTCAATAACAAAGAAGAGCATTCTATATACTCTTTTTCTTTT 296
|||||| ||||||||||| |||||||||||||||| |||||||||||||||||| ||||
Sbjct 321 CTTCAGCTTTGAAACATGTTCAATAACAAAGAAGATCATTCTATATACTCTTTTA-TTTT 379
Query 297 CTCTGA 302
||||||
Sbjct 380 CTCTGA 385
> AT5G59613.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G46430.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:24015474-24016500 REVERSE LENGTH=856
Length=856
Score = 231 bits (125), Expect = 3e-60
Identities = 150/162 (93%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 34 ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGTTGGCCA 93
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGTTGGCCG 60
Query 94 TTCCTCACTGGATTCGCC-TTCACCGGCGTTCTCATCACCAAGTTAACCGCCGGACTCAC 152
|| ||||| ||||||||| || ||||||||||||||||||||| | ||||| ||||||||
Sbjct 61 TTTCTCACCGGATTCGCCGTT-ACCGGCGTTCTCATCACCAAGCTCACCGCTGGACTCAC 119
Query 153 TGAGGAAGATGCGAAGAACTCCAAGTTCGTTCAACAACACAG 194
||||||||| || |||||||||||||| || |||||||||||
Sbjct 120 TGAGGAAGACGCCAAGAACTCCAAGTTTGTCCAACAACACAG 161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17744515397
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5