BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485019
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46460.1 | Symbols: UBC13 | ubiquitin-conjugating enzyme 13 ... 1245 0.0
AT5G59300.1 | Symbols: UBC7, ATUBC7 | ubiquitin carrier protein... 647 0.0
> AT3G46460.1 | Symbols: UBC13 | ubiquitin-conjugating enzyme 13
| chr3:17095878-17097452 REVERSE LENGTH=880
Length=880
Score = 1245 bits (674), Expect = 0.0
Identities = 746/781 (96%), Gaps = 4/781 (1%)
Strand=Plus/Plus
Query 1 TCTTCCTCTTCCTCTTCTCTCAGATCACTTGAAGCTCTAGCTCGATTTCTCATC-ATCCA 59
||||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 77 TCTTCATCTTCCTCTTCTCTCAGATCACTGGAAGCTCTAGCTCGATTTCTCA-CAATCCG 135
Query 60 CCATGAACTCACAAGCTTGTCTTCTTCTTCAGAAACAGCTTAAAGATCTATGTAAGCATC 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 136 CCATGAACTCACAAGCTTGTCTTCTTCTTCAGAAACAGCTTAAAGATCTTTGTAAGCATC 195
Query 120 CTGTAGATGGATTCTCTGCTGGTTTAGTTGATGAGAAGAATATATTCGAATGGAGCGTTA 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 196 CTGTAGATGGATTCTCTGCTGGTTTAGTTGATGAGAAGAATATATTCGAATGGAGCGTAA 255
Query 180 CCATTATTGGACCTCCTGATACTCTCTATGAAGGAGGATTTTTCTATGCCATTATGTCTT 239
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 256 CTATTATTGGACCTCCTGATACTCTCTATGAAGGAGGATTTTTCTATGCCATTATGTCAT 315
Query 240 TCCCACAAAACTATCCTAATAGCCCACCTACGGTGCGGTTTACTTCAGATATTTGGCATC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TCCCACAAAACTATCCTAATAGCCCACCTACGGTGCGGTTTACTTCAGATATTTGGCATC 375
Query 300 CTAACGTTTATCCCGATGGTCGTGTTTGTATATCTATTCTACATCCTCCTGGTGATGATC 359
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 376 CTAACGTTTATCCCGATGGCCGCGTTTGTATATCTATTCTACATCCTCCTGGTGATGATC 435
Query 360 CAAGCGGATATGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACACAGTTGAGAGTATCA 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 CAAGTGGATATGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACACAGTTGAGAGTATCA 495
Query 420 TGTTGAGTATCATATCGATGCTCTCTGGTCCCAACGATGAATCTCCTGCGAACGTTGAAG 479
|||||||||| ||||| |||||||||||||||||||| |||||||| || |||||||| |
Sbjct 496 TGTTGAGTATTATATCAATGCTCTCTGGTCCCAACGACGAATCTCCAGCAAACGTTGAGG 555
Query 480 CTGCTAAAGAATGgagagagaagagagaCGAGTTTAAGAAGAAAGTGAGCCGTTGTGTGA 539
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 556 CTGCTAAAGAATGGAGAGAGAAGAGAGATGAGTTCAAGAAGAAAGTGAGCCGTTGTGTCA 615
Query 540 GAAAGTCTCAAGAAATGTTTTGATCATACAAACACTTTCACACTTCAACTCCACCTTCTA 599
|||||||||||||||||||||||||| | ||||||||||||||| |||| ||| ||||||
Sbjct 616 GAAAGTCTCAAGAAATGTTTTGATCAAAGAAACACTTTCACACTCCAACACCATCTTCTA 675
Query 600 TGGAGTTCAAAAGCTCATTTATCTTATCGACAAAAAT-CCCTTTTAAAAAACTGTCCAAA 658
|||||||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||
Sbjct 676 TGGAGTTCAAAAGCTCATTTATCTTATCGAAAAAAATTCCCTTTGAAAAA-CTGTCCAAA 734
Query 659 CACTACTTGTAATAAACCCGTCTTGCATCTTTTAATCGCGTTCTTGAACGTGAAATGAAG 718
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 735 CACTACTTGTAATAAACCCGTCTTGCATCTTTTAATCGCGTTCCTCAACGTGAAATGAAG 794
Query 719 TGTTTGGTCGaaaaaaaTCTTGTTCTTGCAAAAAACTGACATTAAAATTTATACTATTCT 778
|||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct 795 TGTTTGGTCGAAAAAAATGTTGTTCTTGAAAAAAACTGACATTAAAAGTTATACTATTCT 854
Query 779 T 779
|
Sbjct 855 T 855
> AT5G59300.1 | Symbols: UBC7, ATUBC7 | ubiquitin carrier protein
7 | chr5:23919597-23921304 REVERSE LENGTH=883
Length=883
Score = 647 bits (350), Expect = 0.0
Identities = 473/532 (89%), Gaps = 10/532 (2%)
Strand=Plus/Plus
Query 41 CTCGATTTCTC-ATCATC--CA-CCATGAAC-TCACAAGCTTGTCTTCTTCTTCAGAAAC 95
||||||||||| |||||| || ||||| | || |||||| | ||||| ||||||||||
Sbjct 87 CTCGATTTCTCTATCATCATCATCCATG-GCTTCGCAAGCTAGCCTTCTCCTTCAGAAAC 145
Query 96 AGCTTAAAGATCTATGTAAGCATCCTGTAGATGGATTCTCTGCTGGTTTAGTTGATGAGA 155
| || |||||||| |||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 146 AACTCAAAGATCTCTGTAAGCATCCTGTTGATGGATTCTCTGCTGGTCTCGTTGATGAGA 205
Query 156 AGAATATATTCGAATGGAGCGTTACCATTATTGGACCTCCTGATACTCTCTATGAAGGAG 215
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 206 AGAATATATTCGAATGGAGCGTTACCATTATCGGACCTCCTGATACTCTCTATGAAGGAG 265
Query 216 GATTTTTCTAT-GCCATTATGTC-TTTCCCACAAAACTATCCTAATAGCCCACCTACGGT 273
|||| || || || |||||| | ||||| ||||||||||| ||||| || || || ||
Sbjct 266 GATTCTT-TAACGCGATTATGACATTTCCG-CAAAACTATCCGAATAGTCCGCCAACCGT 323
Query 274 GCGGTTTACTTCAGATATTTGGCATCCTAACGTTTATCCCGATGGTCGTGTTTGTATATC 333
| |||||||||| ||||| |||||||||||||||||| | |||||||||||||| |||||
Sbjct 324 GAGGTTTACTTCGGATATGTGGCATCCTAACGTTTATTCTGATGGTCGTGTTTGCATATC 383
Query 334 TATTCTACATCCTCCTGGTGATGATCCAAGCGGATATGAGCTTGCAAGTGAGCGTTGGAC 393
|||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 384 TATTCTTCATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGTTGGAC 443
Query 394 GCCTGTTCACACAGTTGAGAGTATCATGTTGAGTATCATATCGATGCTCTCTGGTCCCAA 453
|||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| ||
Sbjct 444 TCCTGTTCATACAGTTGAGAGTATTATGTTGAGTATCATATCAATGCTTTCTGGTCCTAA 503
Query 454 CGATGAATCTCCTGCGAACGTTGAAGCTGCTAAAGAATGgagagagaagagagaCGAGTT 513
|||||| ||||| || || ||||||||||| ||||||||| |||| |||||||| |||||
Sbjct 504 CGATGAGTCTCCAGCAAATGTTGAAGCTGCCAAAGAATGGCGAGATAAGAGAGATGAGTT 563
Query 514 TAAGAAGAAAGTGAGCCGTTGTGTGAGAAAGTCTCAAGAAATGTTTTGATCA 565
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 564 CAAGAAGAAAGTGAGCCGTTGTGTCAGAAAGTCTCAAGAAATGTTTTGATCA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5