BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485048
Length=1735
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46780.1 | Symbols: PTAC16 | plastid transcriptionally activ... 2639 0.0
> AT3G46780.1 | Symbols: PTAC16 | plastid transcriptionally active
16 | chr3:17228673-17231201 FORWARD LENGTH=1806
Length=1806
Score = 2639 bits (1429), Expect = 0.0
Identities = 1637/1739 (94%), Gaps = 7/1739 (0%)
Strand=Plus/Plus
Query 1 GCACTCGCCATGGTGTCTCATCTTCAATGTATGGCATCCACATTGTTTACTTGAGGTCCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GCACTCGCCATGGTGTCTCATCTTCAATGTATGGCATCCACATTGTTTACTTGAGGTACA 60
Query 61 AGCAAAAAATCTAAGCTCGTCGACCTCCTCTTAATGGCTTCAAGTTCAACTTCATTCCCG 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCAAAACGTCTAAGCTCGTCGACCTCCTCTTAATGGCTTCAAGTTCAACTTCATTCCCG 120
Query 121 TTAACCATCGCGCCACCACAGGGTGTCAGGTTTAACCGAAGAAAACC-ACGGTTAACCGT 179
||||||| ||||||||| |||||||||||||||||||| |||||||| | ||||||||||
Sbjct 121 TTAACCACCGCGCCACCGCAGGGTGTCAGGTTTAACCGGAGAAAACCGA-GGTTAACCGT 179
Query 180 GTGGGCTAAGCAAACGGTGTTTCAATTCGGGAAAACGAAGGGTGATGATGACTCGGAGGG 239
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 GTGGGCTAAGCAAACGGCGTTTCAACTCGGGAAAACGAAGGGTGATGATGACTCGGAGGG 239
Query 240 GAAACCAAAAGGGAAGAACCCGTTTCAGTTTGACTTCGGTAAGTTACCGGACATCAAGTC 299
||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 240 GAAACAAAAAGGGAAGAACCCGTTCCAGTTTGATTTCGGTAAGTTACCGGACATGAAGTC 299
Query 300 ACTGATACCAGTTGTGTCGAATCCTTCTACCGGTTTAGTGTTTGGTAATAACAGAAAGAA 359
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACTGATACCGGTTGTGACGAATCCTTCTACCGGTTTAGTGTTTGGTAATAACAGAAAGAA 359
Query 360 AGATCCTGGTACGATTTTTGTGGCCGGTGCTACGGGACAAGCTGGTATACGCATAGCTCA 419
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 AGATCCTGGTACTATTTTTGTGGCTGGTGCTACGGGACAAGCTGGTATACGCATAGCTCA 419
Query 420 AACGCTCTTGCAACGAGGATTCAGCGTTCGAGCCGGTGTTCCTGACATTGGAGCTGCCCA 479
||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 420 AACGCTCTTACAACGAGGATTCAGTGTTCGAGCCGGTGTTCCTGACCTTGGAGCTGCCCA 479
Query 480 AGACCTCGCTCGTGTCGCGGCTACTTACAAGATTTTATCAAATGACGAAGTCAAGAGGCT 539
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 GGACCTAGCTCGTGTCGCGGCTACTTACAAGATTTTATCAAATGATGAAGTCAAGAGGCT 539
Query 540 AAACGCAGTTCAATCCCCCTTCCAAGACGCAGAATCAATCGCAAAAGCGATTGGAAACGC 599
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 540 AAACGCAGTTCAATCCCCCTTCCAAGACGCTGAATCAATAGCAAAAGCGATTGGAAACGC 599
Query 600 GGCTAAAGTTGTTGTTACGGTCGGGGCAACAGAGAATGGTCCTGACGCCCAAGTCTCGAC 659
| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 600 AACCAAAGTTGTTGTTACGGTCGGGGCAACAGAGAATGGTCCGGACGCCCAAGTTTCGAC 659
Query 660 CTCAGACGC-TCTGCTCGTGGTCCAAGCGGCTGAGCTCGCTGGTGTAAGCCATGTGGCGA 718
||||||||| | |||||||||||||||| |||||||| || || |||||||| |||||||
Sbjct 660 CTCAGACGCAT-TGCTCGTGGTCCAAGCAGCTGAGCTAGCCGGCGTAAGCCACGTGGCGA 718
Query 719 TCGTTTATGACGGGAGCATCAGCGGATCCACGTACAACGTGCTAGACGGGATTACTTCGT 778
| || || ||||| | ||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 719 TAGTCTACGACGGCACCATCAGCGGGTCCACATACAACGTGCTCGACGGGATTACTTCGT 778
Query 779 TTTTCGGCAACCTTTTCGCAAAATCTCAGCCATTGACTATCTCTGACCTCATCGAGAAAG 838
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTTCGGCAATCTTTTCGCAAAATCTCAGCCATTGACTATCTCTGACCTCATCGAGAAAG 838
Query 839 TAGCTCAAACGGACGTGGCGTACACGCTCATAAAGACGAGTTTGACGGAGGATTTCTCGC 898
|||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 839 TAGCTCAAACCGACGTGGCCTACACACTCATAAAGACGAGTTTGACGGAGGATTTCTCTC 898
Query 899 CGGAGAAAGCTTATAACGTCGTCGTTTCAGCTGAAGGGAGTAACAGAGGCAGTGGCAGTA 958
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 899 CGGAGAAAGCTTATAACGTCGTCGTTTCAGCTGAAGGGAGTAACAGCGGCAGTGGCAGTA 958
Query 959 GTTCGTCCGAGGCCTACAAAGTCCCGAAGTTGAAGATTGCGTCGCTGGTTGCAGACATTT 1018
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 959 GTTCGTCCGAGGCCTACAAAGTTCCGAAGTTGAAGATTGCGTCGCTGGTTGCAGACATTT 1018
Query 1019 TTGCGAACATGGCCGTGGCAGAAAATAAGGTGGTGGAAGTTTCTACAGATCCATCAGCAC 1078
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTGCGAATACGGCCGTGGCAGAAAATAAGGTGGTGGAAGTTTCTACAGATCCATCAGCAC 1078
Query 1079 CGTCGCGGCCAGTGGACGAGCTTTTCAGTGTAATCCCGGAAGATGGGAGGAGAAAAGTGT 1138
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CATCGCGGCCAGTGGACGAGCTTTTCAGTGTAATCCCGGAAGATGGGAGGAGAAAAGTGT 1138
Query 1139 ACGCAGATGCGATTGCAAGGGCAAGAGCAGAGGAAGAAGCTAAAGTTGCAGCTGAGAAAG 1198
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 ACGCAGATGCGATCGCAAGGGAAAGAGCAGAGGAAGAAGCTAAAGTTGCAGCTGACAAAG 1198
Query 1199 CCCGAGAGGCAGCAGAAGCAGCGAAAGAGTTTGAGAAACAAATGCAAAAGCTATCTGAGA 1258
| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1199 CTCGAGAGGCAGCAGAAGCAGCGAAAGAGTTTGAGAAGCAAATGCAAAAGCTCTCTGAGA 1258
Query 1259 AAGAAGCAGAAGCTGCTAGCTTAGCTGAGGATGCGCAGCAGAAAGCAGAAGCCGTGGGAA 1318
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1259 AAGAAGCAGAAGCTGCAAGCTTAGCTGAGGATGCGCAGCAGAAAGCAGATGCCGTGGGAG 1318
Query 1319 TCAAAGTGGACGGTCTATTTAACAAGGTGAAAGATATCGGCTCAGGTCTCTCTTGGAATA 1378
||| |||||||||| |||||||||||| |||||||||| ||||||||||||| |||||||
Sbjct 1319 TCACAGTGGACGGTTTATTTAACAAGGCGAAAGATATCAGCTCAGGTCTCTCCTGGAATA 1378
Query 1379 AACTCGGTTCTCAGTTCGCAACGGCGGTTCAAAACGCTTCAGAGACGCCTAAAGTGCAGG 1438
||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||| ||||
Sbjct 1379 AACTCGGCTCTCAGTTCGCAACTGCGATTCAGAACGCTTCAGAGACGCCTAAAGTACAGG 1438
Query 1439 TTGCTACGGTCAGAGGACAAGCAAAAGCAAGAAACTTGCCACCCAAGAAAGCAGTGGTGA 1498
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1439 TTGCTACGGTCAGAGGACAAGCAAAAGCGAGAAACTTGCCACCCAAGAAAGCAGTGGTGA 1498
Query 1499 AGCAGAGACCATCATCTCCATTTGCATCCAAACCGAAGGAAGAACGTCAAAAGAAGCCAG 1558
||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| |
Sbjct 1499 AGCAGAGACCATCATCTCCGTTTGCATCCAAACCGAAAGAAGAACGTCCGAAGAAGCCGG 1558
Query 1559 AGAAAGAGGTAAGGAAAGTGTTTGGAGGACTGTTTAAGCAAGAGACCATCTATGTCGACG 1618
|||||||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 1559 AGAAAGAGGTGAGGAAAGTGTTCGGAGGATTGTTTAAGCAAGAGACCATCTACATCGACG 1618
Query 1619 ACGACTGAAAACGCCATAAACGATGTCGTTTCAGA-GCTCCGTACAGTTTCCtttttt-t 1676
| || |||||| |||||| ||||||| ||| || | |||||||||||||||||||| |
Sbjct 1619 ATGATTGAAAAGGCCATATGCGATGTCCTTTT-GAAGTTCCGTACAGTTTCCTTTTTTCT 1677
Query 1677 CTTTCCTTCTGTTTCAAGTTAAATTTCTGTAATCATATGATAAAACTATATATAAAAAA 1735
||||||||||||||||||||||| |||||||||| ||||| |||| |||| ||||||||
Sbjct 1678 CTTTCCTTCTGTTTCAAGTTAAAATTCTGTAATCGTATGACAAAATTATACATAAAAAA 1736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85792731405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5