BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485059 Length=498 Score E Sequences producing significant alignments: (Bits) Value AT3G46880.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 442 2e-123 > AT3G46880.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59080.1); Has 51 Blast hits to 51 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17265293-17266266 FORWARD LENGTH=462 Length=462 Score = 442 bits (239), Expect = 2e-123 Identities = 347/396 (88%), Gaps = 20/396 (5%) Strand=Plus/Plus Query 1 ATGGAGGGTAAAGGAAGAGTTGGATCATCATCGCCTTCTTCCTACACCGCTAAAATCTTT 60 ||||||||||||||||||||||||||||||||| ||||||||| ||| ||| || ||||| Sbjct 1 ATGGAGGGTAAAGGAAGAGTTGGATCATCATCGTCTTCTTCCTTCACAGCTCAACTCTTT 60 Query 61 GGCCCCAAGGAACCTTCCTCCTCCGCCAACTTCAACTCCATTTTCCCTCCTCCCTCCAAG 120 ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 61 GGCCCCAAGGAACCTTCCTCCTCTGCCAACTTCAACTCCATTTTCCCTCCT---TCC--- 114 Query 121 AGTATTCAGGGAACATCAAGAAACATCCTAAGTTCCAAATATGGCTCCCTAGACCAACGT 180 | |||||||| |||||||||||||||| |||||| |||| |||||||| |||||| Sbjct 115 ---A---AGGGAACAGCAAGAAACATCCTAAGCTCCAAACATGGGTCCCTAGAACAACGT 168 Query 181 AAAGAATCTGCAACCTGCAATCTAAGTTCATCACTTTATTACGGTGGTCAAGATGTTTAC 240 |||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct 169 AAAGAAGCTGGAACCTGCAATCTAAGCTCATCTCTTTACTACGGTGGTCAAGATGTTTAC 228 Query 241 TCTCAATCCACTCACAACCATACTCACACTACAGTGAAAGAGACAAAATC-TCTGACTTT 299 ||||| |||| |||||||||||| || |||| |||||||||||||| | ||||||| Sbjct 229 TCTCACCCCACACACAACCATACTTACCCTAC----AAAGAGACAAAATCTTTTGACTTT 284 Query 300 GCAAAACGTTGTATCCCA-TCAGATTAACAAGGATCAGAACAGAGATAACAATGATGCAA 358 |||||||||| || || ||||||||||||||||||||||||||||||||| ||||| | Sbjct 285 ACAAAACGTTGAAT--CATTCAGATTAACAAGGATCAGAACAGAGATAACAACGATGCCA 342 Query 359 ACTCGTCGGACGCCTCAAGAGGAAACTGGTGGCAAG 394 | ||||| |||||||| ||||||||||||||||||| Sbjct 343 ATTCGTCTGACGCCTCTAGAGGAAACTGGTGGCAAG 378 Score = 122 bits (66), Expect = 2e-27 Identities = 73/76 (96%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 424 GTTCACTATATTACTAGAAGCTTCTCTAAGTGCGTCTCTGTAGAAGAACA-CAAGTTGAA 482 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 379 GTTCACTATATTACTAGAAGCTTCTCTAAGTGCGTCTCTGTAGAAGAATATCAAGTTGAA 438 Query 483 ACAGAACAATATATGA 498 |||||||||||| ||| Sbjct 439 ACAGAACAATATTTGA 454 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23760751531 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5