BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485061 Length=530 Score E Sequences producing significant alignments: (Bits) Value AT3G46900.1 | Symbols: COPT2 | copper transporter 2 | chr3:1726... 728 0.0 > AT3G46900.1 | Symbols: COPT2 | copper transporter 2 | chr3:17268875-17269510 FORWARD LENGTH=636 Length=636 Score = 728 bits (394), Expect = 0.0 Identities = 479/520 (92%), Gaps = 6/520 (1%) Strand=Plus/Plus Query 1 CATTAGTATCATGGATCATGATAACATGCATAACATGCCACCACCATCACCATCATCATC 60 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 3 CATTAGTATCATGGATCATGATCACATGCATGACATGCCACCACCATCACCATCATCATC 62 Query 61 A---ATGTCGAATCATACCAA-ACCACACATGATGATGATGCACATGACGTTCTTTTGGG 116 | ||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 63 ATCGATGTCGAATCATA-CAACACCACACATGATGATGATGCACATGACCTTCTTTTGGG 121 Query 117 GTAAGAACACGGAGGTTCTATTCTCCGGCTGGCCGGGGACAAGCTCCGGCATGTACGCTC 176 ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 122 GTAAGAACACGGAGGTTCTCTTCTCCGGATGGCCCGGGACAAGCTCCGGCATGTACGCTC 181 Query 177 TCTGTCTCATCGTTGTCTTCCTCCTCGCCGTAATTGCCGAGTGGCTTGCCCATTCGCCGG 236 |||||||||| ||| | ||||||||||||||||||||||||||||| || ||||| ||| Sbjct 182 TCTGTCTCATTGTTATATTCCTCCTCGCCGTAATTGCCGAGTGGCTCGCTCATTCACCGA 241 Query 237 TCCTACGTGTTGGTGGCTCTACCAACCGCGCCGCCGGGCTCGCTCAGACCGCCGTGTACA 296 |||||||||| ||||||| ||||| || ||||||||||||||||| ||||| ||||||| Sbjct 242 TCCTACGTGTCAGTGGCTCAACCAATCGAGCCGCCGGGCTCGCTCAAACCGCTGTGTACA 301 Query 297 CACTCAAGACTGGCCTTTCGTATTTGGTGATGCTCGCTGTTATGTCCTTTAATGGAGGCG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | Sbjct 302 CACTCAAGACTGGCCTTTCGTATTTGGTGATGCTCGCTGTTATGTCCTTTAACGCAGGTG 361 Query 357 TTTTCATCGTTGCTATCGCCGGATACGCCGTTGGTTTCTTTCTCTTTGGAAGCACTACTT 416 |||||||||| ||||||||||| || | ||||||||||||||||||||| |||||||||| Sbjct 362 TTTTCATCGTCGCTATCGCCGGCTATGGCGTTGGTTTCTTTCTCTTTGGGAGCACTACTT 421 Query 417 TCAAGAAACCCTCCGATGACCGGAAAACCACCGAGCTTCTCCCGCCGTCGTCAGGCTGCG 476 ||||||||||||||||||||| ||||||| |||||||||| |||||||| |||||||||| Sbjct 422 TCAAGAAACCCTCCGATGACCAGAAAACCGCCGAGCTTCTTCCGCCGTCTTCAGGCTGCG 481 Query 477 TTTGTTAAACAATTGAAATTACTGTTAttttttttttttt 516 |||||| |||||||||||||||| || | ||||||||||| Sbjct 482 TTTGTTGAACAATTGAAATTACTCTT-TGTTTTTTTTTTT 520 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25368244235 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5