BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485061

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46900.1 | Symbols: COPT2 | copper transporter 2 | chr3:1726...   728    0.0  


> AT3G46900.1 | Symbols: COPT2 | copper transporter 2 | chr3:17268875-17269510 
FORWARD LENGTH=636
Length=636

 Score =  728 bits (394),  Expect = 0.0
 Identities = 479/520 (92%), Gaps = 6/520 (1%)
 Strand=Plus/Plus

Query  1    CATTAGTATCATGGATCATGATAACATGCATAACATGCCACCACCATCACCATCATCATC  60
            |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct  3    CATTAGTATCATGGATCATGATCACATGCATGACATGCCACCACCATCACCATCATCATC  62

Query  61   A---ATGTCGAATCATACCAA-ACCACACATGATGATGATGCACATGACGTTCTTTTGGG  116
            |   ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct  63   ATCGATGTCGAATCATA-CAACACCACACATGATGATGATGCACATGACCTTCTTTTGGG  121

Query  117  GTAAGAACACGGAGGTTCTATTCTCCGGCTGGCCGGGGACAAGCTCCGGCATGTACGCTC  176
            ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct  122  GTAAGAACACGGAGGTTCTCTTCTCCGGATGGCCCGGGACAAGCTCCGGCATGTACGCTC  181

Query  177  TCTGTCTCATCGTTGTCTTCCTCCTCGCCGTAATTGCCGAGTGGCTTGCCCATTCGCCGG  236
            |||||||||| ||| | ||||||||||||||||||||||||||||| || ||||| ||| 
Sbjct  182  TCTGTCTCATTGTTATATTCCTCCTCGCCGTAATTGCCGAGTGGCTCGCTCATTCACCGA  241

Query  237  TCCTACGTGTTGGTGGCTCTACCAACCGCGCCGCCGGGCTCGCTCAGACCGCCGTGTACA  296
            ||||||||||  ||||||| ||||| || ||||||||||||||||| ||||| |||||||
Sbjct  242  TCCTACGTGTCAGTGGCTCAACCAATCGAGCCGCCGGGCTCGCTCAAACCGCTGTGTACA  301

Query  297  CACTCAAGACTGGCCTTTCGTATTTGGTGATGCTCGCTGTTATGTCCTTTAATGGAGGCG  356
            |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct  302  CACTCAAGACTGGCCTTTCGTATTTGGTGATGCTCGCTGTTATGTCCTTTAACGCAGGTG  361

Query  357  TTTTCATCGTTGCTATCGCCGGATACGCCGTTGGTTTCTTTCTCTTTGGAAGCACTACTT  416
            |||||||||| ||||||||||| || | ||||||||||||||||||||| ||||||||||
Sbjct  362  TTTTCATCGTCGCTATCGCCGGCTATGGCGTTGGTTTCTTTCTCTTTGGGAGCACTACTT  421

Query  417  TCAAGAAACCCTCCGATGACCGGAAAACCACCGAGCTTCTCCCGCCGTCGTCAGGCTGCG  476
            ||||||||||||||||||||| ||||||| |||||||||| |||||||| ||||||||||
Sbjct  422  TCAAGAAACCCTCCGATGACCAGAAAACCGCCGAGCTTCTTCCGCCGTCTTCAGGCTGCG  481

Query  477  TTTGTTAAACAATTGAAATTACTGTTAttttttttttttt  516
            |||||| |||||||||||||||| || | |||||||||||
Sbjct  482  TTTGTTGAACAATTGAAATTACTCTT-TGTTTTTTTTTTT  520



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25368244235


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5