BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485107
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47430.1 | Symbols: PEX11B | peroxin 11B | chr3:17480603-174... 1332 0.0
> AT3G47430.1 | Symbols: PEX11B | peroxin 11B | chr3:17480603-17481792
FORWARD LENGTH=979
Length=979
Score = 1332 bits (721), Expect = 0.0
Identities = 899/979 (92%), Gaps = 35/979 (4%)
Strand=Plus/Plus
Query 1 TATCAAAACATGAGACAACAAGAGCAAGTATTAGCCACCACCACAAAGTAATCATCTT-A 59
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
Sbjct 10 TATCAAAACATGAGACAACAAGAGCAAGTATTAG---CCACCACAAAGCAATCATCTTAA 66
Query 60 AACTCAAACCTCAAAACAAACAAAAGACAAAACCCGATTACATCGAGCACAAACGTCACT 119
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 67 AACTCAAACCCCAAAACAAACAAAAGACAAAACCCGATTGTTTCGAGCACAAACGTCACT 126
Query 120 TGTGGTTTACATCGTCTTCATCATCTCCATAACTTCATATTTTCCTCTCTCTT-C-CTTC 177
||||||||||||||||||||||||||||||||||||||| | ||||||| ||| | || |
Sbjct 127 TGTGGTTTACATCGTCTTCATCATCTCCATAACTTCATA-TCTCCTCTC-CTTCCGCTGC 184
Query 178 TACCGTTAGCCATGTCTTTGGACACAGTGGACAAGCTGGTAGTGTTCTTGGCCAAGAGAG 237
||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 185 CACCGTTAGCGATGTCTTTGGACACTGTGGACAAACTGGTGGTGTTCTTGGCCAAGAGAG 244
Query 238 ACGGAATAGACAAGCTTGTGAAGACATTCCAATACGTGGCCAAGCTTGCGTGCTGGCGCT 297
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 245 ACGGAATAGACAAGCTTGTGAAGACATTCCAATACGTGGCCAAGCTCGCGTGCTGGCA-T 303
Query 298 -TTGAGGCCACGCAACCGGAAGCCGCCGATAGGTTCAAGAAGTGGGAGGTCGCGTCCGGT 356
|||| ||||| | ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 304 GTTGAAGCCACACGACCCGAAGCCGCCGATAGGTTCAAGAAGTGGGAGGTCGCCTCCGGT 363
Query 357 CTCAGCCGCAAAGCCTTCAGGACCGGGAGATCTCTCACGGGATTCAATGCGCTGAGACGA 416
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 364 CTCAGCCGCAAAGCCTTCAGGACCGGGAGATCTCTCACGGGGTTCAATGCGCTGAGACGA 423
Query 417 AACCCCGGGGCAACCCCGGCGATCCGTTTCTTGGCGGTCCTAGCCAATTCAGGAGAAATG 476
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 424 AACCCCGGGGCAACCCCGATGATCCGTTTCTTGGCGGTCCTAGCCAATTCAGGGGAAATG 483
Query 477 GTTTACTTCTT-TTTCGATCATTTTCTTTGGTTATCAAGAATTGGTACAATAGACGCCAA 535
||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 484 GTTTACTTCTTCTTT-GATCATTTTCTTTGGTTATCAAGAATTGGTTCAATAGACGCCAA 542
Query 536 GCTCGCCAAGAAAATGAGTTTCATCTCCGCTTTTGGCGAATCTTTCGGCTACACTTTCTT 595
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 543 GCTCGCCAAGAAAATGAGTTTCATATCCGCTTTTGGCGAATCTTTCGGCTACACTTTCTT 602
Query 596 CATCGTCATTGATTGCATTTTCATAAGGCAAAGACTCAAATCCTTGAAAAAA-CTCCGGT 654
|||| ||||||||||||| ||||||| |||||||||||||||||| |||||| |||| |
Sbjct 603 CATCATCATTGATTGCATCTTCATAAAGCAAAGACTCAAATCCTT-AAAAAAGCTCCAG- 660
Query 655 CAT-C--C-GATGAACCGAAAGACGAAATCGGCGCAAAAATTAGCGAGATTCGGGGAGAT 710
||| | | |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 661 CATTCGACCGATGAACCGAAAGAAGAAATCGGCGCCAAAATTAGCGAGATTCGGGGAGAT 720
Query 711 ATAGTAATGAGGTTGATGGGAATTTCTGCCAACATTGCGGATTTACTTATCGCATTGGCA 770
|||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct 721 ATAGTAATGAGGTTGATGGGAATTTCAGCCAACGTTGCGGATTTACTTATAGCATTGGCA 780
Query 771 GAAATTCACCCAAACCCCTTTTGTAACCACACGGTTACACTCGGTATAAGCGGTTTAGTT 830
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 GAAATTCACCCAAACCCCTTTTGTAACCACACCATTACACTCGGTATAAGCGGTTTAGTT 840
Query 831 TCGGCATGGGCCGGCTGGTATAGAAATTGGCCATCGTGAGATGTAATAAAGGCTAATGTT 890
|| || |||||||| |||||||| || ||||||||||||||||||||||| | ||||||
Sbjct 841 TCAGCTTGGGCCGGTTGGTATAGGAACTGGCCATCGTGAGATGTAATAAAATCAAATGTT 900
Query 891 TGTTGTTT-G---GAA--T-------G---AATGTAACTCACTTGAATATATGAAACATT 934
|||||||| | ||| | | ||||||||||||||||||||||||||||||
Sbjct 901 TGTTGTTTTGAATGAACGTATCAAACGTGTAATGTAACTCACTTGAATATATGAAACATT 960
Query 935 TCTATTTTACATTATTTAT 953
||||||||||||||| |||
Sbjct 961 TCTATTTTACATTATCTAT 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46617288416
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5