BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485112 Length=1042 Score E Sequences producing significant alignments: (Bits) Value AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting chlorophy... 1653 0.0 > AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting chlorophyll-protein complex I subunit A4 | chr3:17493372-17495033 REVERSE LENGTH=1266 Length=1266 Score = 1653 bits (895), Expect = 0.0 Identities = 998/1046 (95%), Gaps = 13/1046 (1%) Strand=Plus/Plus Query 1 AACCGATAAGCCTGTATCTCCCT-TCAAACCCATCTCATCCGTCAAATCAACCATGTCAT 59 ||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||| ||||| Sbjct 1 AACCGATAAGCCTGTATCT-CCTCTCAAACCAATCTCCTCCGTCAAATCAACCACGTCAT 59 Query 60 CTAATCCAACGGTAGATACTCA-TCCATCAAACCACAGCCACAAAACTCATTTCAACAAA 118 |||||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||| Sbjct 60 CTAATCCAACGGTAGATACTCAGT-CATCAAACCACAGCCACAAAACTCGTTTCAAGAAA 118 Query 119 CGAATAAACGTACAAAATCCCCCTCAAAGTCTTATTTCTTCACAATCATCTCTGAACTTC 178 ||||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||| || Sbjct 119 CGAATAAACTTACAAAAT-CCCCTCCAAGTCTTATTTCTTCACAACCATCTCTGAAC-TC 176 Query 179 ATCTCTCTATCTCTCTTGATTCCAATCCATTCTTCTTAC-AGTGCCGGGTTCTCGGGTCG 237 |||| || ||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 177 ATCTTTCAATCTCTCTTGATTCCAATCCATTCTTCTT-CAAGTGCCGGGTTCTCGGGTCG 235 Query 238 GATCTTCTAAGTCTAGCTAGGGATAATGGCGACTGTCACTACTCATGCCTCGGCCTCGAT 297 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 236 GATCTTCTAAGTCTAGCTAGGGATAATGGCTACTGTCACTACTCATGCCTCGGCCTCGAT 295 Query 298 TTTCCGACCTTGTACTACTTCAAAGCCAAGATTCCTCACCGGTTCTTCCGGTAGGTTGAA 357 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TTTCCGACCTTG---TACTTCAAAGCCAAGATTCCTCACCGGTTCTTCCGGTAGGTTGAA 352 Query 358 CCGCGACTTGTCGTTTAAATCAATCGGTTCATCGTCCAAAACGTCGTCGTTCAAGGTTGA 417 ||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| Sbjct 353 CCGCGACTTGTCGTTTACATCGATCGGTTCATCGGCCAAAACGTCGTCGTTCAAGGTTGA 412 Query 418 GGCTAAGAAAGGACAATGGTTGCCCGGTTTGGCATCGCCTGATTATCTCACCGGCAGTCT 477 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 AGCTAAGAAAGGAGAATGGTTGCCCGGTTTGGCATCGCCTGATTATCTCACCGGCAGTCT 472 Query 478 TGCCGGTGACAATGGGTTTGACCCGTTGGGTCTAGCAGAGGATCCAGAGAACTTGAAATG 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 TGCCGGTGACAATGGGTTTGACCCGTTGGGTCTAGCAGAGGATCCAGAGAACTTGAAATG 532 Query 538 GTTCGTCCAGGCAGAGCTGGTCAACGGACGATGGGCCATGCTCGGTGTCGCTGGGATGCT 597 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 533 GTTCGTCCAGGCAGAGCTGGTCAACGGACGATGGGCTATGCTCGGTGTCGCTGGGATGCT 592 Query 598 TTTGCCGGAAGTTTTCACCAAGCTCGGAATCATAAACGTTCCGGAGTGGTACGATGCTGG 657 |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| Sbjct 593 TTTGCCGGAAGTTTTCACCAAGATCGGAATCATAAATGTTCCTGAGTGGTACGATGCTGG 652 Query 658 GAAAGAGCAGTACTTTGCATCATCTTCGACATTGTTCGTGATCGAATTCATATTGTTTCA 717 |||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||| Sbjct 653 GAAAGAGCAGTATTTTGCATCGTCGTCGACATTGTTCGTGATCGAGTTCATATTGTTTCA 712 Query 718 TTACGTTGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCC 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 TTACGTTGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCC 772 Query 778 TATCTTCAAGCAATACAGCTTACCTAAGGGTGAAGTTGGTTACCCTGGTGGAATCTTTAA 837 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 TATCTTTAAGCAATACAGCTTACCTAAGGGTGAAGTTGGTTACCCTGGTGGAATCTTTAA 832 Query 838 CCCGCTTAACTTTGCTCCTACGCTCGAGGCCAAGGAGAAAGAAATCGCAAACGGGAGATT 897 ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| || Sbjct 833 CCCGCTTAACTTTGCTCCTACGCAAGAGGCCAAGGAGAAAGAGCTAGCAAACGGGAGGTT 892 Query 898 GGCGATGTTGGCATTCTTAGGGTTTGTGGTTCAACACAATGTGACTGGAAAGGGACCATT 957 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 893 GGCGATGTTGGCATTCTTAGGGTTTGTGGTTCAACACAATGTGACTGGAAAAGGACCATT 952 Query 958 TGAGAATCTGTTGCAGCACTTGTCTGACCCATGGCACAACACTATTGTCCAAACTCT-CA 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 953 TGAGAATCTGTTGCAGCACTTGTCTGACCCATGGCACAACACTATTGTCCAAAC-CTTCA 1011 Query 1017 ACTAAAGAGTTAAGAGGGACTTATGA 1042 |||||||||| |||| ||||||||| Sbjct 1012 ACTAAAGAGTGAAGACAGACTTATGA 1037 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51088127499 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5