BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485126
Length=1855
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47620.1 | Symbols: AtTCP14, TCP14 | TEOSINTE BRANCHED, cycl... 2422 0.0
> AT3G47620.1 | Symbols: AtTCP14, TCP14 | TEOSINTE BRANCHED, cycloidea
and PCF (TCP) 14 | chr3:17558849-17560767 FORWARD LENGTH=1919
Length=1919
Score = 2422 bits (1311), Expect = 0.0
Identities = 1708/1880 (91%), Gaps = 106/1880 (6%)
Strand=Plus/Plus
Query 41 aaaaaatcacatataaat-aaaaacc-aaaaccctaatttataaaa-acatataaaataG 97
|||| ||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||
Sbjct 76 AAAACATCACATATAAATAAAAAACCAAAAACCCTAATTTATAAAATATATATAAAATAG 135
Query 98 TTATAGCTCCCCACTTATATATGCAAAAGCCAACATCAAGTATCTTAAATGTCATAATGG 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TTATAGCTCCCCACTTATATATGCAAAAGCCAACATCAAGTATCTTAAATGTCATAATGG 195
Query 158 ACGGTGGAGACAGCGTCggaggaggaggaggaggaggagACGATCACCACCGTCACCTCC 217
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 196 ACGGTGGAGACAGCGTC------GGAGGAGGAGGAGGAGATGATCACCACCGTCACCTCC 249
Query 218 ACCATCACCACCGCCCTACTTTCCCTTTCCAACTCCTCGGAAAACACGACCCCGACGACA 277
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 250 ACCATCACCACCGCCCTACTTTCCCTTTTCAACTACTCGGAAAACACGACCCCGACGACA 309
Query 278 ACCATCAACAACAACAACAAccttccccttcctcctcctcttctctcttttctctccATC 337
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 310 ACCAT------CAACAACAACCTTCCCCTTCCTCCTCCTCCTCTCTATTTTCTCTCCATC 363
Query 338 AACACCAACAATTATCTCAATCACAACCCCAA-CAGCAATCGCAGCAAAAGCCACAACCG 396
|||||||||||||||||||||| ||||| ||| | ||||| | ||||||| ||||||||
Sbjct 364 AACACCAACAATTATCTCAATCGCAACCTCAATC-GCAAT--C-GCAAAAGTCACAACCG 419
Query 397 CAGACAACTCAAAAAGAGTTATTACAAACGCAAGAGGAATCAGCAGCGGTGGTGGCAGCT 456
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 420 CAGACAACGCAAAAAGAGTTATTACAAACGCAAGAGGAAT---CTGCGGTGGTGGCAGCT 476
Query 457 AAGAAGCCGCCGTTGAAACGAGCGTCGACTAAAGACCGACACACAAAAGTAGACGGAAGA 516
|| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 477 AAAAAGCCACCGTTGAAACGAGCGTCGACGAAAGACCGACACACGAAAGTAGACGGAAGA 536
Query 517 GGAAGGAGGATAAGGATGCCGGCGTTATGTGCAGCTAGGGTTTTTCAGCTGACAAGAGAG 576
|| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 537 GGGAGGAGAATAAGGATGCCGGCGTTATGTGCAGCTAGGGTTTTTCAGCTAACGCGAGAG 596
Query 577 CTTGGTCATAAATCCGACGGTGAGACAATAGAGTGGCTTCTTCAACAAGCTGAACCATCA 636
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CTAGGTCATAAATCCGACGGTGAGACAATAGAGTGGCTTCTTCAACAAGCTGAACCATCT 656
Query 637 GTAATCGCCGCCACCGGAACCGGAACAATCCCGGCGAATTTCACTTCTTTAAACATCTCT 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GTAATCGCCGCCACCGGAACCGGAACAATCCCGGCGAATTTCACTTCTTTAAACATCTCT 716
Query 697 CTCCGTTCTTCAGGCTCTTCCATGTCTCTTCCTTCTCATTTCCGCTCCGCCGCTTCCACT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CTCCGTTCTTCAGGCTCTTCCATGTCTCTTCCTTCTCATTTCCGCTCCGCCGCTTCCACT 776
Query 757 TTTAGCCCTAATAACATGTTTTCTCCGGCGATGCTTCAACAACAACAACAACGA----G- 811
||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 777 TTTAGCCCTAATAACATATTTTCTCCGGCGATGCTTCAACAACAACAACAACAACAACGT 836
Query 812 G-TGGTGGTG--GG-TTTCACCATCCTCATCTACAAGGACGTGCAACGACATCGTCTTTG 867
| |||||||| || ||||| ||||| |||||||| ||||||||| | || |||||||||
Sbjct 837 GGTGGTGGTGTTGGGTTTCATCATCCCCATCTACAGGGACGTGCACCTACGTCGTCTTTG 896
Query 868 TTTCCTGGTATTGATAACTTCACACCAACGACGTCATTTTTGAACTTCCATAATCCGACA 927
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 897 TTTCCTGGTATTGATAACTTCACACCAACGACGTCGTTTTTGAACTTTCATAATCCAACA 956
Query 928 AAGCAAGAAGGAGATCAAGATTCAGAAGAGTTAAACTCAGAGAAGAAAAGAAGACTCCAA 987
||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 957 AAGCAAGAAGGAGATCAAGATTCTGAAGAGTTAAACTCGGAGAAGAAAAGAAGAATCCAA 1016
Query 988 ACGACGTCGGATTTGCATCAACAACA-C--CAACA------TGATCAAATCGGAGGATAT 1038
|||||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 1017 ACGACGTCGGATTTGCATCAACAACAACAACAACACCAACATGATCAAATCGGAGGATAT 1076
Query 1039 ACTCTTCAATCTAGCAACAGTGGATCTACCGCCACCGC--C-GCT-C--AGCAAATACCG 1092
|| |||||||||||||||||||||||||| |||||||| | || | | |||||||||
Sbjct 1077 ACACTTCAATCTAGCAACAGTGGATCTACAGCCACCGCAGCCGCCGCGCAACAAATACCG 1136
Query 1093 GGAAATTTCTGGATGGTTGCGGCGG--G----TG--G-TGGTGGT------AATAACAAC 1137
||||||||||||||||||||||||| | || | ||||||| |||||||||
Sbjct 1137 GGAAATTTCTGGATGGTTGCGGCGGCTGCGGCTGCAGGTGGTGGTGGTGGTAATAACAAC 1196
Query 1138 CAAACAGGTGGTCTTATGACAGCTTCTATTGGTAGCGGTGGAGGTGGCAGCGGCGGTGGA 1197
|||||||||||||||||||||||||||||||||| | ||| |||| | | |||||||
Sbjct 1197 CAAACAGGTGGTCTTATGACAGCTTCTATTGGTA-C--TGG---TGGC-G-G-CGGTGGA 1247
Query 1198 GAGCCTGTTTGGACGTTTCCTTCCATTAACACTGCGGCGGCAGCGTTATACAGAAGTGGC 1257
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 1248 GAGCCTGTTTGGACGTTTCCTTCCATTAACACGGCAGCGGCAGCGTTATATAGAAGTGGC 1307
Query 1258 GTTTCGGGCGTTTCAGGCGGCGCAGTTTCGAGCGGTTTACATTTTATGAATTTCGCAGCG 1317
|||||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1308 GTTTCGGGCGTTCCAAGCGGCGCGGTTTCTAGCGGTTTACATTTTATGAATTTCGCAGCG 1367
Query 1318 CCAATGGCATTTCTTACCGGACAACAACAGCTAGCAACAACTAGTAATCATGAGATTAAT 1377
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 CCAATGGCATTTCTTACTGGACAACAACAGCTAGCAACAACTAGTAATCATGAGATTAAT 1427
Query 1378 GAAGATAATAATAATAATGAAGGAGGAAGAAGTGACGGTGGTGGTGatcatcataataca 1437
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 GAAGATAGTAATAATAATGAAGGAGGAAGAAGTGACGGTGGTGGTGATCATCATAATACA 1487
Query 1438 cagagacatcatcatcatcaacaacaacaacatcatcatAATATTCTCTCCGGTTTGAAT 1497
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1488 CAGAGACATCATCATCATCAACAACAACA---TCATCATAATATTCTCTCCGGCTTGAAC 1544
Query 1498 CAGTACGGACGGCAAGTTTCCGGTGAATCTCAAGCTAGTGGATCACTTGGAGGTGGTGAT 1557
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1545 CAGTACGGACGGCAAGTTTCCGGCGACTCTCAAGCTAGTGGATCACTTGGAGGTGGTGAT 1604
Query 1558 GAGGACGATCCGCAAGATTAGACACACACaaaaaaaCAATTTAACGGTGGGATTTTCTGC 1617
||||| |||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1605 GAGGAGGATCAGCAAGATTAGACACACACAAAAA--CATTTTAACGGTGGGATTTTCTGC 1662
Query 1618 CGGCGGCGGTGGCGGTGACGGCGTTCGGCGGCTGTGTAATACTTTTGTTTTCGCCGTTAA 1677
|| ||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1663 CGACGGCGGTAGCGGTGACGGCGTTCGGCGGCTGTGTAAAACTTTTGTTTTCACCGTTAA 1722
Query 1678 TTTTTT--ATTTTCTGTAGTAA--------G-TAA--AAAACAAAA--------CACGTG 1716
|||||| |||||||||||||| | ||| |||| |||| ||||||
Sbjct 1723 TTTTTTTTATTTTCTGTAGTAATTTTTTTTGCTAAGTAAAAAAAAAAAAAAAAACACGTG 1782
Query 1717 AGAtttt-tttttagttttgatttttttttttgtttactttgatttaaatttgatttttC 1775
||||||| |||||| ||||||||||||| ||| | ||| | ||||||||||||||
Sbjct 1783 AGATTTTCTTTTTAATTTTGATTTTTTTACTTG---A-TTT--T--AAATTTGATTTTTC 1834
Query 1776 TTGTGAGTGAGTGATTAAATAGTACACGAGATTTTTTATGTCAGGTTTTATGGATTTTGA 1835
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1835 TTGTGAGTGAGTGATTAAATAGTACACGAGATTTTTTATGTCAGGTTTTTTGGATTTTGA 1894
Query 1836 GGAGAATATGACACTTTTTT 1855
||||||||||||||||||||
Sbjct 1895 GGAGAATATGACACTTTTTT 1914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91816796805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5