BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485130 Length=695 Score E Sequences producing significant alignments: (Bits) Value AT3G47650.1 | Symbols: | DnaJ/Hsp40 cysteine-rich domain super... 778 0.0 > AT3G47650.1 | Symbols: | DnaJ/Hsp40 cysteine-rich domain superfamily protein | chr3:17569505-17570567 FORWARD LENGTH=787 Length=787 Score = 778 bits (421), Expect = 0.0 Identities = 466/487 (96%), Gaps = 6/487 (1%) Strand=Plus/Plus Query 1 GAGAGGAGCCATCTTATC--TGCTATCGAGTGGGTAAGAAGAACCAGAAAACAGAAAATG 58 |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 15 GAGAGGAGCCATCTTATCTTTGCTATCGAGTGGGTAAGAAGAATCAGAAAACAGAAAATG 74 Query 59 GCGAATTCAGTATGCTTCTTCTCTTCTCCTCCTACTTTTTGCTTCCAATCCCCCAGCAAA 118 ||||||||| ||||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct 75 GCGAATTCACTATGCTTCTTCTCTTCTCCTCCTACCTTTTGCTTCCAATCTCCAAGCAAA 134 Query 119 AACCCTAAACCTTCTCACTTCTTCTCAACTAATAATAACACCTCTTCCTTGGTCCAGAAG 178 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 135 AACCCTAAACCTTCTCACTTCTTCTCAACTAATGATAACACCTCTTCCTTGGTACAGAAG 194 Query 179 AGAGAACTGCTTCAGACTTCAAAATCCCAAAGTTTTGAAGTTAAGGCCGCAAACAATAAT 238 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 195 AGAGAACTGCTTCAGACTTCAAGATCCCAAAGTTTTGAAGTTAAGGCCGCAAACAATAAT 254 Query 239 CCTCAGAGCACTAAACCGAACAGTTTAGTTTGTGCAAATTGTG-ATGGAAACGGTTGTGT 297 |||||| |||||||||| ||||||||||||||||||||||||| | || || |||||||| Sbjct 255 CCTCAGGGCACTAAACCAAACAGTTTAGTTTGTGCAAATTGTGAAGGGGAA-GGTTGTGT 313 Query 298 GGCATGTTCTCAATGCAAAGGAGGTGGTGTGAATTTGATTGATCATTTCAATGGTCAGTT 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 314 GGCATGTTCTCAATGCAAAGGAGGTGGTGTGAATTTGATTGATCATTTCAATGGTCAGTT 373 Query 358 TAAAGCTGGTGCACTCTGTTGGCTTTGCAGAGGTAAAAAGGAGGTGTTGTGTGGGGACTG 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 TAAAGCTGGTGCACTCTGTTGGCTTTGCAGAGGTAAAAAGGAGGTGTTGTGTGGGGACTG 433 Query 418 CAATGGAGCTGGTTTCATTGGTGGGTTCTTGAGCACCTTTGATGAGTAGTTCAAAATA-G 476 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || | Sbjct 434 CAATGGAGCTGGTTTCATTGGTGGGTTCTTGAGCACCTTCGATGAGTAGTAGAAA-TAAG 492 Query 477 CTTCTTC 483 ||||||| Sbjct 493 CTTCTTC 499 Score = 257 bits (139), Expect = 8e-68 Identities = 197/222 (89%), Gaps = 15/222 (7%) Strand=Plus/Plus Query 482 TCTTTTATAAACTTTAGAAGAAGTAAATCTTTCTCTCTATCAATGCTCTTCTATACCAAA 541 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 539 TCTTTTATAAACCTTAGAAGAAGTAAATCTTTCTCTCTATCAATGCTCTTCTTTACCAAA 598 Query 542 AACATGTATTTCTATTTGTTATTGCACACCAAACTTTTATTGTATTGTTGTTTTTCAGAT 601 |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 599 AACATGTATTACTATTTGTTATTGCACACCAAACTTTTGTTGTATTTTTGTTTTTCAGAT 658 Query 602 GCTTCTCTC-Ct-t-t-t--tttt--GTCTTCTACAAATTGAAATATTGTTAAAGTTTAT 653 |||||||| || | | | |||| ||||||||||||||| || ||||| ||| Sbjct 659 TCTTCTCTCTCTCTCTCTCGTTTTTTGTCTTCTACAAATTGC--TA-----AAAGTCTAT 711 Query 654 AGCACTTCTATGGAAGTCTTGTTGATGGCTTGAAATGTTGAA 695 ||||| ||||||| |||||||||||||||||||||||||||| Sbjct 712 AGCACCTCTATGGTAGTCTTGTTGATGGCTTGAAATGTTGAA 753 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33656878490 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5