BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485161
Length=1903
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48000.1 | Symbols: ALDH2B4, ALDH2, ALDH2A | aldehyde dehydr... 2889 0.0
> AT3G48000.1 | Symbols: ALDH2B4, ALDH2, ALDH2A | aldehyde dehydrogenase
2B4 | chr3:17716867-17720020 REVERSE LENGTH=2009
Length=2009
Score = 2889 bits (1564), Expect = 0.0
Identities = 1801/1911 (94%), Gaps = 34/1911 (2%)
Strand=Plus/Plus
Query 1 AGTTAAGCGACATGTGTTAGAGATCTCCGGAGATCTCAACCGTTGGATTCTTTCTCCTTC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTAAGCGACATGTGTTAGAGATATCCGGAGATCTCAACCGTTGGATTCTTTCTCCTTC 60
Query 61 CAATCATATTATAAGTCCCATC--ACagagagagaga-agaagaggaggagaatccgaag 117
||||| ||||||| ||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 61 AAATCAAATTATAAATCCCATCAAACAGAGAGAGAGAGAGAAGAGGAGGAGAATTCGAAG 120
Query 118 ---aaaagataagaaCTTTGACG--TT-----TT----CTTG----TTG---CATCCATG 156
|||||||||||||||||||| || || |||| ||| ||||||||
Sbjct 121 AATAAAAGATAAGAACTTTGACGTTTTGAAGCTTAAAGCTTGAAACTTGTTTCATCCATG 180
Query 157 GCGGCTCGTAGAGTGTCTTCTCTTTTATCTCGATCTTTATCAGCTTCCTCTCCCTTACTG 216
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GCGGCTCGTAGAGTGTCTTCTCTTTTATCTCGATCTTTTTCAGCTTCCTCTCCCTTACTG 240
Query 217 TTTCGTTCTCAAGGGAGAAATTGTTACAGTGGAGGGATCTTAAGGAGATTTGGAACCTC- 275
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TTTCGTTCTCAAGGGAGAAATTGTTACAATGGAGGGATCTTAAGGAGATTTGGAACCTCT 300
Query 276 T-T-CTGCTGCTGAGGAAATCATTAACCCTTCTGTTCAAGTTTCTCACACACAGCTCCTC 333
| | ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 301 TCTGCTGCTGCTGAGGAAATCATAAACCCATCTGTTCAAGTTTCTCACACACAGCTCCTC 360
Query 334 ATAAATGGGAACTTCGTTGACTCTGCTTCTGGTAAGACGTTTCCGACTCTTGATCCGCGG 393
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 ATCAATGGGAACTTTGTTGACTCTGCTTCTGGTAAGACGTTTCCGACTCTTGATCCGAGG 420
Query 394 ACAGGCGAAGTCATTGCGCATGTAGCTGAAGGCGATGCTGAAGATATCAATCGAGCGGTG 453
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 ACAGGCGAAGTCATTGCTCATGTAGCTGAAGGCGATGCTGAAGATATCAATCGAGCTGTG 480
Query 454 AAAGCTGCAAGGAAGGCCTTTGATGAAGGACCTTGGCCTAAAATGAGTGCTTATGAAAGG 513
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAAGCTGCAAGGACGGCCTTTGATGAAGGACCTTGGCCTAAAATGAGTGCTTATGAAAGG 540
Query 514 TCAAGAGTAATGCTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAGGAGCTCGCGTCT 573
|||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 TCAAGAGTTTTGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAAGAGCTCGCGTCT 600
Query 574 CTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCAAGACCGTAGAGATTCCAATG 633
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 601 CTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCTTGACCGCAGAGATTCCCATG 660
Query 634 TTTGCAAGATTGTTCCGTTACTATGCCGGATGGGCGGATAAGATTCATGGACTAACAGTT 693
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 661 TTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTAACAATT 720
Query 694 CCAGCTGATGGAAACTATCATGTTCAAACATTGCATGAACCGATAGGTGTTGCTGGACAG 753
|||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||
Sbjct 721 CCAGCTGATGGAAACTATCAAGTTCACACATTACATGAACCGATAGGTGTAGCTGGACAG 780
Query 754 ATCATTCCATGGAATTTTCCGCTTTTGATGTTTGCTTGGAAAGTTGGTCCTGCTCTTGCT 813
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATCATACCGTGGAATTTTCCACTTTTGATGTTTGCTTGGAAAGTTGGTCCTGCTCTTGCT 840
Query 814 TGTGGTAACACCATTGTCCTCAAAACCGCTGAGCAAACACCTCTCACGGCTTTCTATGCC 873
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGTGGTAACACCATTGTCCTCAAAACCGCTGAGCAAACACCTCTCACGGCTTTCTATGCT 900
Query 874 GGGAAGCTTTTGCTTGAGGCGGGTCTTCCTCCTGGTGTTCTGAATATAGTTTCTGGATTC 933
|| |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 901 GGAAAGCTTTTCCTTGAAGCGGGTCTTCCTCCTGGTGTTCTGAATATTGTTTCGGGATTC 960
Query 934 GGTGCAACTGCAGGTGCTGCCCTCGCTAGTCACATGGATGTAGACAAGCTTGCTTTTACA 993
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 961 GGTGCAACAGCAGGTGCTGCCCTCGCGAGTCATATGGATGTAGACAAGCTTGCTTTTACA 1020
Query 994 GGATCAACTGATACGGGCAAAGTTATACTTGGTTTGGCTGCTAACAGCAATCTTAAGCCG 1053
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1021 GGATCGACTGATACGGGGAAAGTTATACTTGGATTGGCTGCTAACAGCAATCTTAAGCCC 1080
Query 1054 GTAACTCTGGAACTTGGAGGGAAATCACCGTTCATCGTATTCGAAGATGCTGATATCGAT 1113
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 GTAACTCTGGAACTTGGAGGGAAATCACCGTTCATCGTATTCGAAGATGCTGATATTGAT 1140
Query 1114 AAAGCTGTAGAGCTTGCACACTTTGCCCTCTTCTTCAACCAGGGGCAATGTTGCTGTGCG 1173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 AAAGCTGTAGAGCTTGCACACTTTGCCCTCTTCTTCAACCAGGGGCAATGTTGCTGCGCG 1200
Query 1174 GGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTTGAGAAATCAAAGGCA 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTTGAGAAATCAAAGGCA 1260
Query 1234 CGCGCATTGAAACGTGTGGTTGGTGATCCTTTCAGGAAAGGCATTGAACAGGGTCCTCAG 1293
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CGCGCATTGAAACGTGTTGTTGGTGATCCTTTCAGGAAAGGCATTGAACAGGGTCCTCAG 1320
Query 1294 ATTGATTCGAAGCAGTTTGAGAAAGTGATGAAGTACATAAGGTCAGGTGTCGAAAGCAAT 1353
|| |||| |||||| ||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1321 ATCGATTTGAAGCAATTTGAGAAAGTGATGAAGTACATAAAGTCAGGTATCGAAAGCAAT 1380
Query 1354 GCTACTCTTGAATGTGGTGGTGATCAGATTGGAGACAAAGGTTACTTCATCCAACCTACT 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GCTACTCTTGAATGTGGTGGTGATCAGATTGGAGACAAAGGTTACTTCATCCAACCTACT 1440
Query 1414 GTCTTCTCTAATGTTAAGGATGACATGCTTATCGCTCAAGACGAGATTTTCGGTCCAGTC 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GTCTTCTCTAATGTTAAGGATGACATGCTTATCGCTCAAGACGAGATTTTCGGTCCAGTC 1500
Query 1474 CAATCAATCTTGAAATTCAGTGATGTGGATGAGGTGATAAAGAGGGCGAACGAGACGAGG 1533
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1501 CAATCGATCTTGAAGTTCAGTGATGTGGATGAGGTGATAAAGAGGGCGAACGAGACGAAG 1560
Query 1534 TACGGGCTAGCCGCAGGGGTTTTCACAAAGAGTTTGGACACCGCAAACAGGGTTTCGAGG 1593
||||||||||| |||||||||||||| |||| | ||||||| |||||||||||||| |||
Sbjct 1561 TACGGGCTAGCGGCAGGGGTTTTCACGAAGAATCTGGACACGGCAAACAGGGTTTCAAGG 1620
Query 1594 GCTTTGAAAGCTGGCACCGTTTGGGTTAACTGCTTCGACGTCTTTGACGCAGCCATTCC- 1652
|||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||
Sbjct 1621 GCTTTGAAAGCTGGTACCGTATGGGTTAACTGCTTCGACGTATTTGATGCAGCCATACCA 1680
Query 1653 TTTCGGTGGTTACAAGATGAGCGGGAATGGGAGAGAGAAAGGCATATATAGTCTCAATAA 1712
||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1681 TTT-GGTGGTTACAAGATGAGTGGGAATGGGAGAGAGAAAGGCATATACAGTCTCAATAA 1739
Query 1713 TTACTTGCAGATCAAGGCAGTCGTCACTGCTCTTAATAAGCCTGCCTGGATCTGATCTCT 1772
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1740 TTACTTGCAGATCAAGGCAGTCGTCACTGCTCTAAATAAGCCTGCCTGGATCTGATCTCT 1799
Query 1773 GGAGTTTGGTTT-AT--TCATAAATGCTCAAACAAAAGAAAGAGACTTTATAAAAAGTTG 1829
||||| |||||| | |||||||||||||||||||||||| ||||| |||||| |||
Sbjct 1800 GGAGTGTGGTTTCAGCATCATAAATGCTCAAACAAAAGAAATAGACTCTATAAA--GTTA 1857
Query 1830 CAATAGTAATAATTAAGGTCATGGTTTGTAACTTGAGTAACGGATTGTGAT 1880
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1858 CAATAGTAATAATTAAGGTCATGGTTTGTAATTTGAGTAACGGATTGTGAT 1908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94226422965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5