BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485206
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48460.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1773 0.0
> AT3G48460.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr3:17949445-17951195 FORWARD LENGTH=1310
Length=1310
Score = 1773 bits (960), Expect = 0.0
Identities = 1125/1206 (93%), Gaps = 5/1206 (0%)
Strand=Plus/Plus
Query 1 AAGCTCAAATTTTAAATCTCACTTCCTT-CCAAAATGTCTTtctccatctctctcctcct 59
|||||||||||| ||||||||||||||| || |||||||| ||| ||||||| ||||||
Sbjct 18 AAGCTCAAATTTCAAATCTCACTTCCTTATCACAATGTCTTCCTCTATCTCTCCCCTCCT 77
Query 60 cacaaccgccgtctccgtcacaatcctcctcttctccaccatctccACCGCGGCGACAAT 119
|||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 78 CACAACCGCCATCTCCGTCGCAATCCTCCTCTTCTCCACCATCTCCACAGCGGCGACAAT 137
Query 120 TCCAAACATCCACCATCCATTCAACAAAATCTACGCCTTCGGCGATTCTTTCACCGACAC 179
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 138 TCCAAACATCCACCGTCCATTCAACAAAATCTACGCCTTCGGAGATTCTTTCACCGACAC 197
Query 180 CGGAAACTCACGCTCCGGCGAAGGACCAGCCGGATTCGGACACTTGTCAAGTCCTCCGTA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 198 CGGAAACTCACGCTCCGGCGAAGGACCAGCCGGATTCGGACACTTGTCAAGTCCTCCATA 257
Query 240 CGGCATGACTTTCTTCCGGCGACCAACAAACCGTTACTCCGACGGTCGTCTCACCATAGA 299
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 258 CGGCATGACTTTCTTCCGACGACCAACAAACCGTTACTCCGACGGTCGTCTAACCATCGA 317
Query 300 CTTCGTGGCAGAGTCGATGAATTTACCGTTTCTACCACCGTACCTCAGCCTGAGATCAAC 359
||||||||||||||| ||||||||||||||||| |||||||| |||||||| | | | ||
Sbjct 318 CTTCGTGGCAGAGTCAATGAATTTACCGTTTCTGCCACCGTATCTCAGCCTCAAAACCAC 377
Query 360 TAACGGTAACGGCACGGTTACGGATACTCACGGCGTTAATTTCGCCGTCTCTGGAGCAAC 419
||||| ||||||||| | |||||||||||||||||||||||||| ||||||||| ||||
Sbjct 378 TAACGCTAACGGCACAGCAACGGATACTCACGGCGTTAATTTCGCTGTCTCTGGATCAAC 437
Query 420 GGTGATTAAACACGCGTTTTTCGTGAAGAACAATCTATCGCTTGATATGACTCCTCAGTC 479
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 438 GGTGATTAAACACGCGTTTTTCGTCAAGAACAATCTGTCGCTTGATATGACTCCTCAGTC 497
Query 480 TATAGAAACAGAGCTTGCTTGGTTCGAGAAGTATTTAGAGACACTTGGAACGAATCAGAA 539
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 498 TATAGAAACAGAGCTTGCTTGGTTTGAGAAGTACTTGGAGACACTTGGAACGAATCAGAA 557
Query 540 GGTTTCTTTGTTTAAAGATTCTCTCTTTTGGATTGGAGAAATCGGAGTGAATGATTATGC 599
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 558 GGTTTCGTTGTTTAAAGATTCTCTCTTTTGGATTGGAGAAATTGGAGTGAATGATTATGC 617
Query 600 GTACACTCTTGGATCTACTGTGTCAAGCGATACCATTAGAGAACTTAGTATCTCAACTTT 659
||| || |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 618 GTATACCCTTGGATCTACTGTGTCAAGTGACACCATTAGAGAACTTAGTATCTCAACTTT 677
Query 660 TACAAGGTTTTTGGAGACATTGTTGAACAAAGGTGTGAAATATATGTTGGTACAAGGACA 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 678 TACAAGGTTTTTGGAGACATTGTTGAACAAAGGTGTGAAATATATGTTGGTGCAAGGACA 737
Query 720 TCCGGCAACTGGATGCTTGACATTAGCAATGTCACTAGCCGCAGAAGATGATCGGGACAG 779
||| |||||||||||||| || ||||||||||| | |||||||||||||||||||||||
Sbjct 738 TCCAGCAACTGGATGCTTAACGTTAGCAATGTCGTTGGCCGCAGAAGATGATCGGGACAG 797
Query 780 TCTTGGATGTGTGCAGAGTGCCAATAACCAGAGTTACACCCACAATCTAGCTCTTCAATC 839
||| |||||||||||||||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 798 TCTAGGATGTGTGCAGAGTGCCAATAACCAAAGTTACACTCACAATCTTGCCCTTCAATC 857
Query 840 CAAACTTAAACAACTTAGGATCAAATATCCGACTGCCACAATAGTCTACGCAGATTACTG 899
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 858 CAAACTTAAACAACTTAGGATCAAGTATCCGAGTGCCACAATAGTCTACGCAGATTACTG 917
Query 900 GAACGCATACCGTGCGGTGATTCAAA-ACCCTAGCAAGTACGGCATCAGAGAGAAGTTCA 958
|||||| ||||||||||||||| ||| |||||||||||||||| |||| ||||||||||
Sbjct 918 GAACGCGTACCGTGCGGTGATT-AAACACCCTAGCAAGTACGGTATCACCGAGAAGTTCA 976
Query 959 AGGCGTGCTGTGGAACTGGAGAGCCGTACAACTTCCAGGTGTTCCAGACTTGTGGGACGG 1018
||||||| ||||||| ||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 977 AGGCGTGTTGTGGAATTGGAGAGCCGTACAACTTCCAAGTGTTCCAAACGTGTGGGACGG 1036
Query 1019 CTGCAGCTACCGCGTGCAAGGACCCAAATCAATACATCAATTGGGACGGAGTCCACTTGA 1078
||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1037 ATGCAGCTACAGTGTGTAAGGACCCGAATCAATACATCAATTGGGACGGAGTCCACTTGA 1096
Query 1079 CCGAGGCCATGTATAAGGTTATGGCCGATATGTTCCTTGGCGGAACATTCACTCGTCCTA 1138
||||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||
Sbjct 1097 CCGAGGCTATGTATAAGGTTATGGCCGATATGTTCCTTGACGGCACTTTCACTCGTCCTA 1156
Query 1139 GATTTAGTAACCTGTTGATCAAGAAACTGAAC-AGTTTATAAAAGAATTGTTTTACTGAT 1197
|||||||| || |||||||||||||||| ||| | ||||| || ||||||||||||||||
Sbjct 1157 GATTTAGTGACTTGTTGATCAAGAAACTAAACTA-TTTATGAATGAATTGTTTTACTGAT 1215
Query 1198 TTTTTa 1203
||||||
Sbjct 1216 TTTTTA 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59487645825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5