BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485221
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80700.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 645 0.0
AT1G80980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 597 4e-170
> AT1G80700.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G80980.1); Has 476
Blast hits to 340 proteins in 85 species: Archae - 2; Bacteria
- 44; Metazoa - 84; Fungi - 36; Plants - 40; Viruses - 0;
Other Eukaryotes - 270 (source: NCBI BLink). | chr1:30331922-30333400
FORWARD LENGTH=868
Length=868
Score = 645 bits (349), Expect = 0.0
Identities = 426/463 (92%), Gaps = 6/463 (1%)
Strand=Plus/Plus
Query 128 CTGAACTTGGagagaagaaaaggaaagaagaagaaaagaaagagaaagaagaagctgaac 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CTGAACTTGGAGAGAAGAAAAGGAAAGAAGAAGAAAAGAAAGAGAAAGAAGAAGCTGAAC 459
Query 188 aaaaggcattagaagtagaagG-AGCAACCAAGTCTCACGAAGAGCTAATGGAAATGAAA 246
||||||||||| ||||||| || |||||||||||||||||||||||||||||| |||| |
Sbjct 460 AAAAGGCATTACAAGTAGA-GGCAGCAACCAAGTCTCACGAAGAGCTAATGGAGATGAGA 518
Query 247 CAGAGATTGGGAAAAATCGAAGAGACAATAAAGGAGATTGTTTTGGAAACCAATAAACCT 306
|||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 519 CAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAAATTGTTTTGGAAACCAAGAAACCT 578
Query 307 TCAGAGAAAGCTCCGACCAAAACCCAAGAAGATCAATATACTAAACTCTCCCCAAAAGAA 366
|||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 579 TCAGGGAATGCTCCAACCAAAACCCAAGAAGATCAATCTACTAAACTCTCCCCAAAAGAA 638
Query 367 GAATCAAAACCAGAAAAAGAACATAAGGGCAATGTACAGAAACCAGCTGATGGACTTCAT 426
| |||| | |||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 639 GTATCACAGCCAGAAAAAGAACACAAGGGCAATGTACAGAAACCAGGTGATGGACCTCAC 698
Query 427 TGAGATTATTAGAAGGGAAACTTAGGTGGTAGATGAAGAAGGATGTACCCTTCTGTGAGT 486
|||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| ||
Sbjct 699 TGAGATGATTAGAAGGGAAACTTAGGTGGTAGATGACGAAGAATGTACCCTTCTGTGGGT 758
Query 487 TATTATGCTTTTGGAACTAATACAGTAGTTGATGCAATTTTCGGATTTTGA-TTTTGGTT 545
|||||| ||||||||||| ||||| ||||||||||| || || ||||| | ||||| ||
Sbjct 759 TATTATTCTTTTGGAACTGATACACTAGTTGATGCAGTTCTCTCATTTT-ACTTTTGTTT 817
Query 546 GTTGAATCACCTTT-TGAATTAATATAGATCACAAGGATTTGC 587
|||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 818 GTTGAATCACCTTTAT-AATTAATATAGATTACAAGGATTTGC 859
Score = 167 bits (90), Expect = 1e-40
Identities = 104/111 (94%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 20 AGCTCGATTTTGTGACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAATAAAT 79
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 235 AGCTCGATTTCGTTACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAAT 294
Query 80 TTGGCTTTGATTGGCATGTGGTGCAATTCTTTATCGTCTGTTTGCCATCTG 130
|||| |||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 295 TTGGGTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTG 345
> AT1G80980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G80700.1); Has 477
Blast hits to 341 proteins in 85 species: Archae - 2; Bacteria
- 44; Metazoa - 78; Fungi - 37; Plants - 42; Viruses - 0;
Other Eukaryotes - 274 (source: NCBI BLink). | chr1:30422058-30424087
REVERSE LENGTH=1418
Length=1418
Score = 597 bits (323), Expect = 4e-170
Identities = 396/431 (92%), Gaps = 6/431 (1%)
Strand=Plus/Plus
Query 128 CTGAACTTGGagagaagaaaaggaaagaagaagaaaagaaagagaaagaagaagctgaac 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 CTGAACTTGGAGAGAAGAAAAGGAAAGAAGAAGAAAAGAAAGAGAAAGAAGAAGCTGAAC 1050
Query 188 aaaaggcattagaagtagaagG-AGCAACCAAGTCTCACGAAGAGCTAATGGAAATGAAA 246
||||||||||| ||||||| || |||||||||||||||||||||||||||||| |||| |
Sbjct 1051 AAAAGGCATTACAAGTAGA-GGCAGCAACCAAGTCTCACGAAGAGCTAATGGAGATGAGA 1109
Query 247 CAGAGATTGGGAAAAATCGAAGAGACAATAAAGGAGATTGTTTTGGAAACCAATAAACCT 306
|||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1110 CAGAGACTGGGAAAAATCGAAGAGACAATAAAAGAAATTGTTTTGGAAACCAAGAAACCT 1169
Query 307 TCAGAGAAAGCTCCGACCAAAACCCAAGAAGATCAAT-ATACTAAACTCTCCCCAAAAGA 365
|||| ||| ||||| |||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1170 TCAGGGAATGCTCCAACCAAAACCCAAGAAGATCAATCA-ACTAAACTCTCCCCAAAAGA 1228
Query 366 AGAATCAAAACCAGAAAAAGAACATAAGGGCAATGTACAGAAACCAGCTGATGGACTTCA 425
|| |||| | |||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 1229 AGTATCACAGCCAGAAAAAGAACACAAGGGCAATGTACAGAAACCAGGTGATGGACCTCA 1288
Query 426 TTGAGATTATTAGAAGGGAAACTTAGGTGGTAGATGAAGAAGGATGTACCCTTCTGTGAG 485
|||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| |
Sbjct 1289 CTGAGATGATTAGAAGGGAAACTTAGGTGGTAGATGACGAAGAATGTACCCTTCTGTGGG 1348
Query 486 TTATTATGCTTTTGGAACTAATACAGTAGTTGATGCAATTTTCGGATTTTGA-TTTTGGT 544
||||||| ||||||||||| ||||| ||||||||||| || || ||||| | ||||| |
Sbjct 1349 TTATTATTCTTTTGGAACTGATACACTAGTTGATGCAGTTCTCTCATTTT-ACTTTTGTT 1407
Query 545 TGTTGAATCAC 555
|||||||||||
Sbjct 1408 TGTTGAATCAC 1418
Score = 172 bits (93), Expect = 3e-42
Identities = 105/111 (95%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 20 AGCTCGATTTTGTGACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAATAAAT 79
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 826 AGCTCGATTTCGTGACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAAT 885
Query 80 TTGGCTTTGATTGGCATGTGGTGCAATTCTTTATCGTCTGTTTGCCATCTG 130
|||| |||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 886 TTGGGTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTG 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28231590614
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5