BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485228
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48740.1 | Symbols: SWEET11, AtSWEET11 | Nodulin MtN3 family... 1877 0.0
AT5G23660.1 | Symbols: MTN3, SWEET12, AtSWEET12 | homolog of Me... 730 0.0
> AT3G48740.1 | Symbols: SWEET11, AtSWEET11 | Nodulin MtN3 family
protein | chr3:18052466-18054755 REVERSE LENGTH=1310
Length=1310
Score = 1877 bits (1016), Expect = 0.0
Identities = 1146/1206 (95%), Gaps = 20/1206 (2%)
Strand=Plus/Plus
Query 1 GCTCGTGCCAATAGCTTTTATATTAAGAGATAACACTTACAAATCTAAGTGCTATCTCTC 60
|||||||||| ||||||||| ||||||||| ||||||| |||| ||||||||||||||||
Sbjct 1 GCTCGTGCCATTAGCTTTTACATTAAGAGAAAACACTTGCAAAACTAAGTGCTATCTCTC 60
Query 61 TTCTTCTTCCTCCTAAAAACCCTTAACAACTTATATATCATGAGTCTCTTCAACACTGAA 120
||||||||||| || || |||||||||||||| ||||||||||||||||||||||
Sbjct 61 TTCTTCTTCCTTCT------CC-TAACAACTTATATACCATGAGTCTCTTCAACACTGAA 113
Query 121 AACACATGGGCCTTTGTCTTTGGCTTGCTCGGAAATCTCATCT-CTTTCGCCGTGTTCCT 179
|||||||||||||||||||||||||||||||| || || |||| |||| |||||||||||
Sbjct 114 AACACATGGGCCTTTGTCTTTGGCTTGCTCGGCAACCTTATCTCCTTT-GCCGTGTTCCT 172
Query 180 CTCTCCTGTGCCAACGTTCTATAGGATTTGGAAGAAGAAGACAACAGAAGGGTTTCAATC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 173 ATCTCCTGTGCCAACGTTCTATAGGATTTGGAAGAAGAAGACAACAGAAGGGTTTCAGTC 232
Query 240 TATCCCTTATGTTGTGGCGCTCTTCAGTGCGACGCTTTGGCTTTACTATGCGACACAGAA 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TATTCCTTATGTTGTGGCGCTCTTCAGTGCGACGCTTTGGCTTTACTATGCGACACAGAA 292
Query 300 GAAAGATGTCTTCCTCCTCGTAACCATTAACGCCTTTGGATGCTTCATCGAAACCATCTA 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 293 GAAAGATGTCTTCCTCCTCGTAACCATTAACGCCTTTGGTTGCTTCATCGAAACCATCTA 352
Query 360 CATCGCTATGTTCCTTGCCTACGCTACCAAGCCAGCCCGGATGTTGACAGTGAAGACGTT 419
|||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| | |
Sbjct 353 CATCTCTATGTTCCTTGCCTACGCTCCCAAGCCAGCTCGGATGTTGACAGTGAAGATGCT 412
Query 420 ACTTCTTATGAACTTTGGAGGATTCTGTGTGATTCTCCTTCTTTGCCAATTCTTGGTAAA 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 413 ACTTCTTATGAACTTTGGAGGATTCTGTGCGATTCTCCTTCTTTGCCAATTCTTGGTAAA 472
Query 480 AGGAGCCACACGTGCTAAGATTATCGGAGGAATCTGTGTTGGATTCTCTGTTTGTGTTTT 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 473 AGGAGCCACACGTGCTAAGATTATCGGAGGAATCTGTGTCGGATTCTCTGTTTGTGTTTT 532
Query 540 CGCTGCTCCTCTAAGCATAATCAGGACGGTAATAAAGACAAGGAGTGTGGAGTACATGCC 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 533 CGCTGCTCCTCTAAGCATAATCAGGACGGTAATAAAGACAAGAAGTGTGGAGTACATGCC 592
Query 600 CTTTAGCTTATCCTTAACCCTTACCATCAGTGCTGTCATATGGCTCCTTTATGGTCTTGC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTTAGCTTATCCTTAACCCTTACCATCAGTGCTGTCATATGGCTCCTTTATGGTCTTGC 652
Query 660 TCTCAAGGACATCTATGTTGCCTTCCCGAATGTGATTGGTTTTGCTCTCGGTGCACTCCA 719
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 653 TCTCAAGGACATCTATGTTGCTTTCCCGAATGTGCTTGGTTTTGCTCTCGGTGCACTCCA 712
Query 720 AATGATACTCTACGTTGTCTACAAATACTGTAAAACGTCGCCGCATCTAGGAGAGAAAGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AATGATACTCTACGTTGTCTACAAATACTGTAAAACGTCGCCGCATCTAGGAGAGAAAGA 772
Query 780 AGTCGAAGCTGCTAAGTTACCGGAGGTGAGCCTCGATATGCTGAAGCTGGGCACAGTTTC 839
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 773 AGTCGAAGCTGCTAAGTTACCGGAGGTGAGCCTCGATATGTTGAAGCTAGGCACAGTTTC 832
Query 840 ATCCCCTGAGCCAATCTCAGTCGTTCGTCAAGCGAACAAGTGTACCTGCGGCAATGATCG 899
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 833 ATCCCCTGAGCCAATCTCAGTGGTTCGTCAAGCGAACAAGTGTACCTGCGGAAATGATCG 892
Query 900 AAGGGCTGAGATTGAAGATGGACAAACCCCTAAAAACGGCAAGCAGTCCTCTTCTGCAGC 959
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 893 AAGGGCTGAGATTGAAGATGGACAAACCCCTAAACATGGCAAGCAGTCCTCTTCCGCAGC 952
Query 960 AGCTACATGAATAAAAATACGTTGACCATGGAATGTTGACTTTACCCCAACTTGATATAC 1019
||||||||||||||||||||||| | ||| | | |||||||||||||||||||||||
Sbjct 953 AGCTACATGAATAAAAATACGTT-A--ATG---T-T-GACTTTACCCCAACTTGATATAC 1004
Query 1020 CAAACCACCACGTGTACCC-GTTACGCTGTCGTATTTTTCTGAGTTTATCAAGTGTGTGA 1078
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1005 CAA-CCACCACGTGTACCCCGTTACGCTGTCGTATTTTTCTGAGTTTATCAAGTGTGCGA 1063
Query 1079 AGTAGAGAATTAATTTTCCGGAGTTAATTTCACTACTTCTTTTTAAAT-TTTATGTAATT 1137
||||||| |||||||||||||||||| |||| |||||||||| |||| ||| |||||||
Sbjct 1064 AGTAGAGGATTAATTTTCCGGAGTTAGTTTCTCTACTTCTTTATAAAAATTTGTGTAATT 1123
Query 1138 ATCTACTGGGGATCATGTATATTTCCTATTTTCTGATTTAACGAAAACTATTTAAAATAT 1197
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 ATCTATTGGGGATAATGTATATTTCCTATTTTCTGATTTAACGAAAACTATTTAAAATAT 1183
Query 1198 CCATCA 1203
||||||
Sbjct 1184 CCATCA 1189
> AT5G23660.1 | Symbols: MTN3, SWEET12, AtSWEET12 | homolog of
Medicago truncatula MTN3 | chr5:7971651-7973925 REVERSE LENGTH=1272
Length=1272
Score = 730 bits (395), Expect = 0.0
Identities = 698/841 (83%), Gaps = 33/841 (4%)
Strand=Plus/Plus
Query 98 TCATGAG-TCTCTTCAACACTGAAAACACATGGGCCTTTGTCTTT-GGCTTGCTCGGAAA 155
||||| | ||||||| ||||| | ||||||||||||||||| ||| ||||||||||||||
Sbjct 128 TCATG-GCTCTCTTCGACACTCATAACACATGGGCCTTTGT-TTTCGGCTTGCTCGGAAA 185
Query 156 TCTCATCT-CTTTCGCCGTGTTCCTCTCTCCTGTGCCAACGTTCTATAGGATTTGGAAGA 214
||||| | |||| || || ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 186 CCTCATTTCCTTT-GCTGTTTTCCTCTCTCCCGTGCCAACGTTCTATAGGATTTGTAAGA 244
Query 215 AGAAGACAACAGAAGGGTTTCAATCTA-TCCCTTATGTTGTGGCGCTCTTCAGTGCGACG 273
|||| || |||||||| |||||||||| |||| ||||| |||||||||||||| |||| |
Sbjct 245 AGAAAACCACAGAAGGATTTCAATCTATTCCC-TATGTGGTGGCGCTCTTCAGCGCGATG 303
Query 274 CTTTGGCTTTACTATGCGACACAGAAGAAAGATGTCTTCCTCCTCGTAACCATTAAC-GC 332
|||||||| ||||| || || |||||||||||||||||||| ||||| ||||| ||| |
Sbjct 304 CTTTGGCTCTACTACGCTACTCAGAAGAAAGATGTCTTCCTTCTCGTCACCATCAACAG- 362
Query 333 CTTTGGATGCTTCATCGAAACCATCTACATCGCTATGTTCCTTGCCTACGCTA-CCAAGC 391
|||||| |||||||| |||||||| |||||| | || || |||||| ||| | |||||
Sbjct 363 CTTTGGTTGCTTCATTGAAACCATATACATCTCCATCTTTGTTGCCTTCGC-ATCCAAGA 421
Query 392 CAGCCCGGATGTTGACAGTGAAGACGT-TACTT-CTTATGAACTTTGGAGGATTCTGTGT 449
|||||| ||| | || |||||| | | | || || |||||||||||||| |||||| |
Sbjct 422 AAGCCCGAATGCTAACGGTGAAG-C-TCTTGTTGCTAATGAACTTTGGAGGGTTCTGTTT 479
Query 450 GATTCTCCTTCTTTGCCAATTCTTGGTAAAAGGAGCCACACGTGCTAAGATTATCGGAGG 509
||||||||| || ||||||||||||| ||||||| |||||||||| ||||| || |||||
Sbjct 480 GATTCTCCTCCTCTGCCAATTCTTGGCAAAAGGAACCACACGTGCGAAGATCATTGGAGG 539
Query 510 AATCTGTGTTGGATTCTCTGTTTGTGTTTTCGCTGCTCCTCTAAGCATAATCAGGACGGT 569
|||||||| ||||||||||| || ||||| ||||| || || ||||| ||||| |||||
Sbjct 540 TATCTGTGTCGGATTCTCTGTCTGCGTTTTTGCTGCGCCGCTTAGCATTATCAGAACGGT 599
Query 570 AATAAAGAC-AAGGAGTGTGGAGTACATGCCCTTTAGCTTATCCTTAACCCTTACCATCA 628
|||||||| || ||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 600 GATAAAGACGAA-AAGTGTGGAGTACATGCCGTTTAGCTTATCCTTGACTCTTACCATCA 658
Query 629 GTGCTGTCATATGGCTCCTTTATGGTCTTGCTCTCAAGGACATCTATGTTGCCTTCCCGA 688
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 659 GTGCGGTCATATGGCTCCTTTATGGTCTTGCTCTTAAGGATATCTATGTTGCCTTCCCAA 718
Query 689 ATGTGATTGGTTTTGCTCTCGGTGCACTCCAAATGATACTCTACGTTGTCTACAAATACT 748
| |||||||| |||| ||| |||||||| |||||||||||||| || || ||||||||||
Sbjct 719 ACGTGATTGGGTTTGTTCTAGGTGCACTTCAAATGATACTCTATGTGGTTTACAAATACT 778
Query 749 GTAAAACGTCGCCGCATCTAGGA-GAGAAAGAAGTCGAAGCTGCTAAGTTACCGGAGGTG 807
| |||||| || || || | || ||||||||| | || ||||| || || || || |||
Sbjct 779 GCAAAACGCCGTCGGATTT-GGTTGAGAAAGAACTTGAGGCTGCGAAATTGCCAGAAGTG 837
Query 808 AGCCTCGATATGCTGAAGCTGGGCACAGTTTCATCCCCTGAGCCAAT--C--TCA--GTC 861
||| |||||||| ||||| | || ||| | |||| ||||| ||| | | ||| |||
Sbjct 838 AGCATCGATATGGTGAAGTTAGGTACACTCACATCTCCTGAACCAGTAGCGATCACCGTC 897
Query 862 GTTCG-TCAAGCGAACA-AGTGTACCTGCGGCAATGATCGAAGGGCTGAGATTGAAGATG 919
|| || || | ||||| | |||| ||| || ||||||| |||||||||||| |||
Sbjct 898 GTCCGATCG-GTGAACACA-TGTAACTGT---AACGATCGAAATGCTGAGATTGAAAATG 952
Query 920 G 920
|
Sbjct 953 G 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5