BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485260 Length=2562 Score E Sequences producing significant alignments: (Bits) Value AT3G49060.1 | Symbols: | U-box domain-containing protein kinas... 4002 0.0 > AT3G49060.1 | Symbols: | U-box domain-containing protein kinase family protein | chr3:18187214-18191935 REVERSE LENGTH=2647 Length=2647 Score = 4002 bits (2167), Expect = 0.0 Identities = 2436/2568 (95%), Gaps = 10/2568 (0%) Strand=Plus/Plus Query 1 AAAGTTATCAAATCTAGAGATAGAGAGAGTGAGAAAAGGCGAAAAATATGGGAGAAATCG 60 |||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| Sbjct 12 AAAGTTATCAAATCTAGAGATAGAGAGAGTGA-AGAGGGCGAAAAATATGGGAGAAATCG 70 Query 61 GTGGAGAAGAACTGGTCTTAGATGTGGATGAGACGATCTTCGTCGCGGTTGCGGAAGATG 120 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 71 GTGGAGAAGAACTGGTCTTAGATGTGGATGAGACGATTTTCGTCGCGGTGGCGGAAGATG 130 Query 121 TGGAGAGAAGCAAAACCACGGTGTTATGGGCGGCGCGTAACTTTTCCGGCAAGAAGATTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 131 TGGAGAGAAGCAAAACCACGGTGTTATGGGCGGCGCGTAACTTTTCCGGCAAGAAGATTT 190 Query 181 GCTTGCTTTATGTTCATCGAACTGCTCGCGCTGCCTCCTGGACGCACAAGAAACTTGTCG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 191 GCTTGCTTTATGTTCATCGAACTGCTCGCGCTGCCTCCTGGACGCACAAGAAACTTGTTG 250 Query 241 GTGGTAGCTTTAAAAAACATGATGTCAAGGTGATTGAGCGAGTTGAGAAACCCAAAGTGG 300 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 251 GTGGTAGCTTTAAAAAGCATGATGTCAAGGTGATTGAGCGAGTTGAGAAACCCAAAGTGG 310 Query 301 ATGAGCTGATGAATTCTTATCTTCATCTTTTATCTGAAACTGAGGTTCAAACAGATAAAC 360 |||| ||||||||||||||||| || |||||||||||||||||| ||||||||||||||| Sbjct 311 ATGAACTGATGAATTCTTATCTCCAACTTTTATCTGAAACTGAGATTCAAACAGATAAAC 370 Query 361 TTTGCATTGCGGGGCAAAATATTGAGGAAGGTATCTTAGAACTAATTGCTCGCCACAAAA 420 |||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||| Sbjct 371 TTTGCATTGCGGGGCAAAATATCGAGGAATGTATCGTAGAACTAATTGCTCGGCACAAAA 430 Query 421 TTAAGTGGTTAGTCATGGGAGCTGCATCAGATAAGCATTACTCATGGAAAATGACGGATC 480 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 431 TTAAGTGGTTAGTAATGGGAGCTGCATCAGATAAGCATTACTCATGGAAAATGACGGATC 490 Query 481 TAAAGTCCAAGAAAGCCATATTCGTTTGCAAAAAAGCTCCTGATTCCTGCCATATCTGGT 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 491 TAAAGTCCAAGAAAGCCATATTCGTTTGCAAAAAAGCTCCTGATTCCTGCCATATTTGGT 550 Query 541 TTCTGTGTAAAGGTTACCTTATCTTTACAAGGGCGTCAAATGAGGATAGTAATAACAGAC 600 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 551 TTCTCTGTAAAGGTTACCTTATCTTTACAAGGGCGTCAAATGACGATAGTAATAACAGAC 610 Query 601 AAACGATGCCGCCCCTAGTACAGCTGGATTCAGATAATGAGACAAGGAAATCAGAAAAAT 660 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 611 AAACAATGCCGCCCCTAGTACAGCTGGATTCAGATAACGAGACAAGGAAATCAGAAAAAT 670 Query 661 TGGAATCGTCTTATATGAGGAGAAGATTAAGATATTGGCGCAGCCTCCTTGAACAAGATG 720 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 671 TGGAATCTTCTTATATGAGGAGAAGATTAAGATATTGGCGCAGCCTCCTTGAACAAGATG 730 Query 721 GTGAGAAAGACACAGGTCAATTGGAGAGAGAAAAGGTAGAACCAAGAGCAACTCCACATT 780 |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| | || Sbjct 731 GTGAGAAAGATACAGGTCAACTGGAGAGAGAAAAGGTAGAACCAAGAGCACCTCCTCTTT 790 Query 781 TTTCTTCAGGTTCGAGTTCTTCCTTTGGTGAGCCGGTTGGTCCAGAGCCTATTAGCCCAG 840 |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 791 TTTCATCAGGTTCGAGTTCTTCCTTTGGAGAGCCGGTTGGTCCAGAGCCGGTTAGCCCAG 850 Query 841 AATTGGTTGACTCGGATACACTAACTACCTCAAATGTTAAGGAAAAAGAGCGTGAAGGAG 900 ||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| | Sbjct 851 AATTGGTTGACTCAGATACACTAAATACCTCAAATGTTGAGGAAAAAGAGCGTGAAGGGG 910 Query 901 ATGTTGCACGCAAAGTCCATAGGTATGATAAAGCCATGCATGATATTGGCCAATCAGAGA 960 |||| || |||||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct 911 ATGTAGCGCGCAAAGTTCATAGGTATGATAAAGCCATGCATGATATTGGACAATCAGATA 970 Query 961 GAACGGTATATGGGGAAACTGGGAAAAATTGGAAAGAGGATGCCAGTACCACAGAGGCTT 1020 ||||||| |||||||| |||||||||| ||| |||||||||||||||| |||||||||| Sbjct 971 GAACGGTTTATGGGGAGGCTGGGAAAAAATGGGAAGAGGATGCCAGTACAACAGAGGCTT 1030 Query 1021 TATGCAAGGCTAGAGCTTTGGAAGGCTTATGCATTAAGGAGTCGAGCCAAAGAAAGAGAT 1080 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1031 TATGCAAGGCTAAAGCTTTGGAAGGCTTATGCATTAAGGAGTCGAGCCAAAGAAAGAGAT 1090 Query 1081 TGGAGGAGTTGCTGGAAAAGGAAAAGCATGAAGTAAAAATGGTAATAGAGCAGAACAACG 1140 ||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| | Sbjct 1091 TGGAGGAATTGCTGGAAAAGGAAAAGCTTGAAGTAAAAATGGTAATAGAGCAAAACAATG 1150 Query 1141 GATTCATGAAAGAACTTCAAATGGTTCAGGGTCAGAATCTTAAGTTGGAGAGCCAGATAA 1200 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| | Sbjct 1151 GATTCATGAAAGAACTTCAGATGGTTCAGGGTCGGAATCTTAAGTTGGAGAGCCAGATGA 1210 Query 1201 GGAAACTGCAAGACTTGGAAAAAGAACATGGTGAGAAATTCGATACGGCTATGGAGCTCT 1260 ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1211 GGAAACTACAAGACTTGGAAAAAGAACATGGTGAGAAATTTGATACAGCTATGGAGCTCT 1270 Query 1261 TGAAAAGTTTTAGGCAGAAAAGGGATGAGATCCGGATCGATCATGAGAACGCAGTAAAGG 1320 |||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1271 TGAAAAGTTTCAGACAGAAAAGGGATGAGATCCGGATCGATCACGAGAACGCAGTAAAGG 1330 Query 1321 AAGTAAACGCACTGAGAAGGCTGATTAAAGGAGAGACTGGAGAGTTTTCTGGGTCAGAAA 1380 |||| |||||||||||||| ||| ||||||||||||| ||||||| ||||||||| |||| Sbjct 1331 AAGTGAACGCACTGAGAAGACTGGTTAAAGGAGAGACCGGAGAGTCTTCTGGGTCGGAAA 1390 Query 1381 TGCTCGAGTACTCTTTTATGGAAATCAATGAGGCTACTAATGAATTTGATCCATCATGGA 1440 |||| || |||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1391 TGCTTGACTACTCTTTTATGGAAATCAATGAGGCTACTAACGAATTTGATCCATCTTGGA 1450 Query 1441 AACTTGGAGAAGGCAAATACGGAAGTGTCTACAAAGGGAATCTTCAACATCTTCAAGTTG 1500 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1451 AACTTGGAGAAGGCAAATACGGAAGTGTCTATAAAGGGAATCTTCAACATCTTCAAGTTG 1510 Query 1501 CAGTAAAGATGTTGCCCTCATATGGATCCCTGAATCACTTTGAGTTTGAGCGTCGGGTGG 1560 | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1511 CTGTAAAGATGTTACCCTCATATGGATCCTTGAATCACTTTGAGTTTGAGCGTCGGGTGG 1570 Query 1561 AAATTTTAAGCAGGGTGAGGCATCCAAATCTGGTAACACTGATGGGTGCTTGTCCAGAGT 1620 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1571 AGATTTTAAGCAGGGTAAGGCATCCAAATCTGGTAACACTGATGGGTGCTTGTCCAGAGT 1630 Query 1621 CTCGGTCTCTCATTTATCAATATATTCCTAACGGAAGCCTTGAAGACTGCTTTTCATCTG 1680 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1631 CTCGGTCTCTCATTTATCAATATATTCCTAACGGAAGCCTCGAAGACTGCTTTTCATCTG 1690 Query 1681 AGAACAACGTGCCTGCACTTTCATGGGAATCTCGGATCAGGATTGCCTCTGAGATATGCT 1740 | |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1691 AAAACAACGTTCCTGCTCTTTCATGGGAATCTCGGATAAGGATTGCCTCTGAGATATGCT 1750 Query 1741 CTGCTCTCCTGTTTCTTCATACAAACATTCCTTGCATCATTCATGGAAACCTAAAACCGT 1800 |||| || |||||||||||| |||||||||| ||||||||||||||||||||||| |||| Sbjct 1751 CTGCCCTTCTGTTTCTTCATTCAAACATTCCGTGCATCATTCATGGAAACCTAAAGCCGT 1810 Query 1801 CTAAGATTCTCCTGGATTCCAATCTCGTCACCAAAGTCAACGACTACGGGATCTCTCAGC 1860 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1811 CTAAGATTCTCCTGGATTCCAATCTCGTCACCAAAATCAACGACTACGGGATCTCTCAGC 1870 Query 1861 TGATCCCGATTGACGGATTCGACAAATCTGATCCTCACGTAGATCCACATTACTTTGTTT 1920 ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||| Sbjct 1871 TGATCCCGATTGACGGATTAGACAAATCAGATCCTCATGTAGATCCACATTACTTCGTTT 1930 Query 1921 CCAGGGAAATGACGCTGGAATCAGATATATACGCGTTTGGGATCATTCTCCTTCAGCTTC 1980 | || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1931 CAAGAGAAATGACGCTAGAATCAGATATATACGCGTTTGGGATCATTCTCCTGCAGCTTC 1990 Query 1981 TCACCAGAAGACCTGTATCTGGCATACTGAGAGACGTCAAATGCGCTCTGGAGAACGATA 2040 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1991 TCACCAGAAGGCCTGTATCTGGCATACTGAGAGATGTCAAATGCGCTCTGGAGAACGATA 2050 Query 2041 ACATCAGTGCGGTTTTGGATAATTCAGCAGGAGACTGGCCAATTGCACGAGGCAAAAAGC 2100 |||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||| Sbjct 2051 ACATCAGTGCGGTTCTGGATAATTCAGCAGGAGACTGGCCAGTCGCACGAGGTAAAAAGC 2110 Query 2101 TAGCTAATGTAGCCATCCGTTGTTGTAAGAAAAACCCAATGAATCGACCAGACTTAGCAG 2160 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 2111 TAGCTAATGTAGCCATCCGTTGCTGTAAGAAAAACCCGATGAATCGACCAGACTTAGCAG 2170 Query 2161 TGGTTCTACGGTTTATAGATCGAATGAAAGCCCCAGAAGTGCCTTCATCAGA-A-A-CAT 2217 ||||||||||||||||||||||||||||||| |||||||| ||||||||||| | | ||| Sbjct 2171 TGGTTCTACGGTTTATAGATCGAATGAAAGCACCAGAAGTTCCTTCATCAGAGACATCAT 2230 Query 2218 CATACTC-AGACCAAAAAGTTCCACGCCGCCCTCCTTCTCATTACCTCTGCCCTATTTTT 2276 ||||| | | ||||||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 2231 CATACGCCA-ACCAAAACGTTCCACGCCGGCCTCCTTCTCATTACCTCTGCCCCATTTTC 2289 Query 2277 CAGGAAGTGATGAAAGATCCTTTGATAGCAGCAGATGGGTTCACTTACGAAGCAGAAGCG 2336 ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| Sbjct 2290 CAGGAAGTGATGAAAGATCCTCTGATAGCAGCAGACGGATTCACTTACGAAGCAGAAGCG 2349 Query 2337 ATTAGAGAATGGTTAGCAAATGGACACGATACGTCGCCAATGACAAACTTGAAGATGGAA 2396 |||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||| Sbjct 2350 ATTAGAGAGTGGTTAGCGAATGGACACGATACGTCGCCAATGACAAACCTGAAAATGGAA 2409 Query 2397 GATTGCAATCTCATACCTAATCACGCTCTTCATCTAGCTATCCAAGATTGGCAAAACCAA 2456 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2410 GATTGCAACCTCATACCTAATCACGCTCTTCATCTAGCTATCCAAGATTGGCAAAACCAA 2469 Query 2457 TGGTGATTTACTTTTGCCTTTCTATTCA--GACAACAATATTGCTATTTTTAACTCCCAA 2514 |||||||||||||||||||| || || | |||||||||||||||||||||||||||||| Sbjct 2470 TGGTGATTTACTTTTGCCTT-CT-TTGAAAGACAACAATATTGCTATTTTTAACTCCCAA 2527 Query 2515 tttttttAGATTGTCACTTTGTAAATTGACCCCTAAACGTATGGAAAA 2562 || |||||||||||||||||||||||| ||||||||| ||||| |||| Sbjct 2528 TTATTTTAGATTGTCACTTTGTAAATTTACCCCTAAAGGTATGAAAAA 2575 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 127173200505 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5