BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485285 Length=1758 Score E Sequences producing significant alignments: (Bits) Value AT3G49260.3 | Symbols: iqd21 | IQ-domain 21 | chr3:18262399-182... 2610 0.0 > AT3G49260.3 | Symbols: iqd21 | IQ-domain 21 | chr3:18262399-18265979 FORWARD LENGTH=1740 Length=1740 Score = 2610 bits (1413), Expect = 0.0 Identities = 1622/1721 (94%), Gaps = 22/1721 (1%) Strand=Plus/Plus Query 1 GTGAGACATCctctccttctctaacttaagtctctctgtgacttctctctctcacacctc 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 32 GTGAGACATCCTCTCCTTCTC-AACTTAAGTCTCTCTGTGACTTCTCTCTCT--CACCTC 88 Query 61 ttcttct-tatctc--tctcattctctAGACTTCAAAAATCGCTTCTAATGGCTTGATCA 117 ||||| | | |||| |||| ||||||| ||||||| ||||||||||||| | ||||||| Sbjct 89 TTCTTATCTCTCTCGTTCTCTTTCTCTAAACTTCAACAATCGCTTCTAATCGTTTGATCA 148 Query 118 CATTGCACAAACATGTAATAATAGAGCTTATGATCAAAGAATTTTGCCGGAAATATGGGG 177 |||||||||||||| || |||||||||||||||||||||| | ||||||||||||||||| Sbjct 149 CATTGCACAAACAT-TATTAATAGAGCTTATGATCAAAGAGTGTTGCCGGAAATATGGGG 207 Query 178 AAGAAAGGGAGTGGTGGATGGTTCTCGACGGTGAAGAAGAGAGTCTTCAAATCCTCTCCT 237 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 208 AAGAAAGGGAGTGGTGGATGGTTCTCGACGGTGAAGAAGAAAGTCTTCAAATCCTCTCCT 267 Query 238 AAAGACTCAAAGAGAGAGAACAACATTGGTAGTAATAACGCCGACATATGGCAGCAGCAA 297 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 268 AAAGACTCCAAGAGAGAGAACAACATTGGTAGTAATAACGCCGACATATGGCAGCAGCAG 327 Query 298 CACGATACGCAAGAAGTCGTGTCGTTTGAAAATTTTCCGGCGGAAAGTTCACCGGAGATC 357 || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 328 CATGATACGCAAGAAGTCGTGTCGTTTGAACATTTTCCGGCGGAAAGTTCACCGGAGATC 387 Query 358 TCTCATGACGTTGAGAGCACAGCTTCTACTCCAGCAACCAATGTTGGAGACAGAAAACAC 417 || |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 388 TCCCATGACGTCGAGAGCACAGCATCTACTCCAGCAACTAATGTTGGAGACAGAAAACAC 447 Query 418 GCCATGGCTGTGGCTATAGCCACTGCAGCTGCTGCCGAAGCCGCGGTTGCAGCCGCACAA 477 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 448 GCTATGGCTGTAGCTATAGCCACTGCAGCTGCTGCCGAAGCCGCGGTTGCAGCCGCACAA 507 Query 478 GCCGCCGCTAAAGTTGTTCGGCTTGCCGGCTATAACCGCCAGACGGAGGAAGATAGCGCC 537 || ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 508 GCTGCCGCTAAAGTCGTTCGACTTGCCGGCTACAACCGCCAGACGGAGGAAGATAGCGCC 567 Query 538 GCCGTGCTCATCCAATCGCACTATAGGGGTTATTTGGCGAGGCGAGCACTTCGTGCCTTA 597 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 568 GCCGTGCTAATCCAATCGCACTATAGGGGTTATTTGGCGAGACGAGCACTTCGTGCCTTA 627 Query 598 AAAGGACTAGTTAGGCTACAAGCATTGGTCCGTGGCAACCACGTTCGAAAACAGGCACAA 657 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 628 AAAGGACTAGTTAGGCTACAAGCATTGGTCCGTGGCAACCACGTACGAAAACAGGCACAG 687 Query 658 ATGACTATGAAATGTATGCAAGCTTTGGTTCGTGTCCAAGGCCGAGTCAGAGCGAGAAGA 717 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 688 ATGACTATGAAATGTATGCAAGCATTGGTTCGTGTCCAAGGCCGAGTCAGAGCAAGAAGA 747 Query 718 CTACAAGTGGCTCATGACCGATTTAAGAAACAGTTTGAGGAAGAAGAGAAGCGGTCCGGG 777 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 748 CTCCAAGTGGCTCATGACCGGTTTAAGAAACAGTTTGAGGAAGAAGAGAAGCGGTCCGGG 807 Query 778 ATGGAAAAACTGAACAAGGT---GTTTGCGAATCTCAAAACCGAACGAGAGAAACCGAAG 834 |||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||||| Sbjct 808 ATGGAAAAACCGAACAAGGTAGGGTTTGCGAATCTCAAAACGGAACGAGAGAAGCCGAAG 867 Query 835 AAATTGCATGAAGTAAATCGAACCAGCCAGTACCAAACTCCGGGAAAGGAAAAAGAGAGG 894 ||||| |||||||| ||||||||||| | ||||||||||| |||||||||||||||||| Sbjct 868 AAATTACATGAAGTGAATCGAACCAGTCTGTACCAAACTCAAGGAAAGGAAAAAGAGAGG 927 Query 895 AGTGAAGGAATGATGAAAAGAGAGAGGGCTCTTGCTTATGCATACACTTACCAGCGCCAA 954 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 928 AGTGAAGGAATGATGAAAAGAGAGAGGGCTCTAGCTTATGCGTACACTTACCAGCGCCAA 987 Query 955 ATGCAACACACAAATGGTGAAGAAGGGATTGGGCTTTCTTCTAATGGGCCTGATAGAAAC 1014 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 988 ATGCAACACACAAATAGTGAAGAAGGGATTGGGCTTTCTTCTAATGGGCCTGATAGAAAC 1047 Query 1015 CAATGGGCTTGGAATTGGCTTGACCATTGGATGTCTTCTCAGCCATACACAGGCCGTCAA 1074 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1048 CAATGGGCTTGGAATTGGCTTGACCATTGGATGTCTTCCCAGCCATACACTGGCCGTCAA 1107 Query 1075 ACCGGCCCGGCTCCCGGTCCCGGACAGTACAATCCTCCTCCGTATCCGCCTTTCCCGACA 1134 || || |||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1108 ACTGGTCCGGGTCCCGGTCCCGGACAGTACAATCCTCCTCCGTATCCGCCTTTTCCGACA 1167 Query 1135 GCCGCAGCAGCCACCACATCTGATGATGTTTCGGAGAAGACGGTTGAAATGGACGTGACC 1194 || || ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1168 GCTGCGGCAACCACCACATCTGATGATGTATCGGAGAAGACGGTGGAAATGGACGTGACC 1227 Query 1195 ACTCCGACTAGCCTCAAGGACAATATAATCGGGCTTATTGATCGAGAGTATATAGACTTA 1254 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1228 ACTCCGACTAGCCTCAAGGGCAATATAATCGGGCTTATTGATCGAGAGTATATAGACTTA 1287 Query 1255 GGATCATATAGACAAGGCCATAAGCAACGGAAAAGCCCAACCCATATACCAAGCTATATG 1314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1288 GGATCATATAGACAAGGCCATAAGCAACGGAAAAGCCCAACCCATATACCAAGCTATATG 1347 Query 1315 GCTCCAACCGCATCTGCAAAAGCTAAAGTTCGAGACCAAGGCACAACCGTCAAGCTACAA 1374 ||||||||||||||||| || |||||||||||||| |||||| |||||||||| |||||| Sbjct 1348 GCTCCAACCGCATCTGCTAAGGCTAAAGTTCGAGATCAAGGCCCAACCGTCAAACTACAA 1407 Query 1375 GGATCTTCTTTTATGCCGTACTGGAACTCCTCAACCAAAAACGGGTCGGTTAATGGATCA 1434 ||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1408 GGAACTTCGTTTATGCCGTATTGGAACTCCTCGACCAAAAACGGGTCGGTTAATGGATCA 1467 Query 1435 GGTTGTGATTCATCAAGTTCAGGTGGAGCAATAACAACCGGTTACCCCGGTCCTAGGAGT 1494 ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1468 GGTTGTGATTCGTCAAGTTCAGGTGGAGCAATAACAACTGGTTATCCCGGTCCTAGGAGT 1527 Query 1495 CCTAACCCGAAATCGGATATCCGACGTAAACCGGTTAGTCCTAGTCAAAGTCCTACCGGG 1554 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1528 CCGAACCCAAAATCGGATATCCGACGTAAACCGGTTAGTCCTAGTCAAAGTCCTACCGGG 1587 Query 1555 TTTGGGAAGAGAGGCTGGAGGCATGATCATTAGAAGAAA-TCATCT-TAAATCTTGAATA 1612 ||||| ||||||||||||||||||||||||||||||||| | || | ||| ||||||||| Sbjct 1588 TTTGGAAAGAGAGGCTGGAGGCATGATCATTAGAAGAAAGT-ATATGTAA-TCTTGAATA 1645 Query 1613 AAAACTTACATGTGTGCGCTTGGTTGGTTAATTATCGTGTTTGAAATATATTTTCGTTGT 1672 |||||||||||||||| | |||||| ||||||| |||||||||||||||||| ||| Sbjct 1646 AAAACTTACATGTGTG-G-TTGGTT----AATTATCTTGTTTGAAATATATTTTCCCTGT 1699 Query 1673 TACATAATTGTATATGACATTAATAAT--AACATGTCATCT 1711 ||||||||||||||||||||||||||| |||||||| ||| Sbjct 1700 TACATAATTGTATATGACATTAATAATTGAACATGTCTTCT 1740 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86947343940 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5