BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485304
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49470.1 | Symbols: NACA2 | nascent polypeptide-associated c... 1179 0.0
> AT3G49470.1 | Symbols: NACA2 | nascent polypeptide-associated
complex subunit alpha-like protein 2 | chr3:18340976-18342489
FORWARD LENGTH=966
Length=966
Score = 1179 bits (638), Expect = 0.0
Identities = 698/727 (96%), Gaps = 3/727 (0%)
Strand=Plus/Plus
Query 1 ACCACACCGTTCCTTATCCATTTGTCTGACGCAAAATCGAATCGGAACCCTAAAATCTCT 60
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 28 ACCTCACCGTTCCTTATCCATTTGGCTGACGCAAAATCGAATCGGAACCCTAAAATCTCT 87
Query 61 -CGAAAGCCATGTCTCCTCCTCCTGCTGTAGTCACTGAATCCGCCGATGGACAACCTGAG 119
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 88 CCGAAAGCCATGTCTCCTCCTCCTGCTGTAGTCACTGAATCTGCCGATGGACAACCTGAG 147
Query 120 CAACCACCAGCTGCTGCCATTGCTGAAGAGCTGGAGAAAAAGCTTCAGACTGATGAACCG 179
|||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 CAACCACCGGTTACCGCCATTGCTGAAGAGCTGGAGAAAAAGCTTCAGACTGATGAACCG 207
Query 180 ATTGTagaagatgttaaagatgacgaagacgatgatgatgatgacgaagaagaggaagac 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 208 ATTGTAGAAGATGTTAAAGATGATGAAGACGATGATGATGATGACGAAGAAGAGGAAGAC 267
Query 240 gacgatgCTCAAGGTGTTAGTGGAAGTTCAAAGCAGAGTAGAAGTGAAAAGAAGAGTAGG 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 GACGATGCTCAAGGTGTAAGTGGAAGTTCAAAGCAGAGTAGAAGTGAAAAGAAGAGTAGG 327
Query 300 AAGGCGATGTTGAAGCTCGGTATGAAACCAGTCACTGGTGTTAG-CAGAGTAACCATCAA 358
||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 328 AAGGCGATGTTGAAGCTCGGTATGAAACCTGTCACTGGTGTTAGTC-GAGTAACCATCAA 386
Query 359 GAGAACGAAAAACGTACTCTTCTTCATCTCTAAACCGGATGTCTTCAAAAGCCCGCATTC 418
||||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||
Sbjct 387 GAGAACGAAAAACGTTCTCTTCTTTATCTCTAAGCCTGATGTCTTTAAGAGCCCGCATTC 446
Query 419 AGAAACCTATGTTATATTCGGTGAGGCCAAGATCGAGGATTTGAGCTCTCAGCTTCAAAC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 AGAAACCTATGTTATATTCGGTGAGGCCAAGATCGAGGATTTGAGCTCTCAGCTTCAAAC 506
Query 479 GCAAGCTGCTCAACAGTTTAGGATGCCTGAAATCGGAGCCACAGCTCAGAGAGCAGAGGC 538
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 507 GCAAGCTGCTCAACAGTTTAGGATGCCTGAAATTGGAGCCACATCTCAGAGAGCAGAGGC 566
Query 539 ATCGGCAGCCACAGTAGAAGCACAGGTGGAAGAAGATGAAGAGGACATTGATGAGACCGG 598
|||| ||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 567 ATCGACAGCCACTGTAGAAGCACAGGTGGAAGAAGATGAAGAGGAAATCGATGAGACCGG 626
Query 599 TGTGGAGGCTCGTGACATTGACTTGGTCATGACTCAGGCTGGAGTTTCGCGTAGCAAAGC 658
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 627 TGTGGAGGCTCGTGACATTGACTTGGTCATGACTCAGGCTGGAGTTTCTCGTAGCAAAGC 686
Query 659 GGTTAAGGCACTCAAGAGTCACAATGGAGACATTGTAAGTGCAATAATGGAACTCACTAC 718
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 687 GGTTAAAGCACTCAAGAGTCACGATGGAGACATTGTAAGTGCAATAATGGAACTCACTAC 746
Query 719 TTAAGAG 725
|| ||||
Sbjct 747 TTGAGAG 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35163902900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5