BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485358 Length=1393 Score E Sequences producing significant alignments: (Bits) Value AT3G50000.1 | Symbols: CKA2, ATCKA2 | casein kinase II, alpha c... 2109 0.0 AT2G23080.1 | Symbols: | Protein kinase superfamily protein | ... 883 0.0 > AT3G50000.1 | Symbols: CKA2, ATCKA2 | casein kinase II, alpha chain 2 | chr3:18534459-18536970 FORWARD LENGTH=1467 Length=1467 Score = 2109 bits (1142), Expect = 0.0 Identities = 1321/1402 (94%), Gaps = 33/1402 (2%) Strand=Plus/Plus Query 1 ACCGCGGGAGAGTTCACTGAATGATTACATGCACCTAATCTTCTTCTTCTCCTACTTTCT 60 ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ACCGCGGGAGAGTGCACCGAATGGTTACATGCACCTAATCTTCTTCTTCTCCTACTTTCT 60 Query 61 TCGAC-GT--TTCTTGTTATTGTGCGCCATCTTGATCTTACGTGCGCCAACGGCGCATTC 117 ||||| || | ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 TCGACGGTACCTGTTGTTATTGTGCGCCATCTTGATCTTACGTGCGCCGTTGGCGCATTC 120 Query 118 TCCTATACCACCGTTAACGTGCGTCACCACCGGAACCGTTGAATCAGACGTTTCTGGTAT 177 || ||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 121 TCTTATACCACCATTAACGTGCGTCAACACCGGAACCGTTGAATCAGACGTTACTGGTAT 180 Query 178 CAGGTTCGATCGTTGCCTCGATACCGATTCTCTCGCCGAGATCTCTCTTTCCTCCGTCAC 237 ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 181 CAGGTTCGATCGTTGCCTCGATACCGATTCTCTCGCCAAGATCTCTCTTTCCACCGT--- 237 Query 238 AGGAGCGATGTCGAAAGCTCGTGTGTATACCGATGTTAACGTGATTCGACCTAAGGATTA 297 | ||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 238 -----C-ATGTCGAAAGCTCGTGTTTATACCGATGTTAACGTGATCCGACCTAAGGATTA 291 Query 298 TTGGGATTACGAATCTCTCAATGTTCAGTGGGGGGAGCAAGATGATTACGAGGTAGTGAG 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 TTGGGATTACGAATCTCTCAATGTTCAGTGGGGGGAGCAAGATGATTACGAGGTAGTGAG 351 Query 358 GAAGGTGGGGAGAGGGAAATACAGTGAGGTTTTTGAGGGGATTAACATGAATAGCAACGA 417 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 352 GAAGGTGGGGAGAGGGAAATACAGTGAGGTTTTTGAGGGGATTAACATGAATAACAATGA 411 Query 418 GAAGTGCATTATCAAGATTCTCAAGCCTGTTAAGAAGAAGAAGATTCGAAGAGAGATTAA 477 |||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 412 GAAGTGTATTATCAAGATTCTCAAGCCTGTTAAGAAGAAGAAGATTAGAAGGGAGATTAA 471 Query 478 AATACTTCAGAATCTCTGTGGAGGGCCGAATATTGTCAAGCTGCTTGATGTTGTCAGAGA 537 ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 472 AATACTTCAGAATCTTTGTGGAGGGCCAAATATTGTAAAGCTGCTTGATGTTGTCAGAGA 531 Query 538 TCAACACTCAAAAACACCAAGCTTGATATTTGAGTATGTTAACAGTACTGACTTTAAGGT 597 ||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||| Sbjct 532 TCAACACTCAAAAACGCCAAGCTTGATATTTGAGTATGTAAACAGCACAGACTTTAAGGT 591 Query 598 TCTGTATCCAACATTGACTGATTATGACATCCGATACTACATCTATGAGCTGTTGAAGGC 657 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 592 TCTGTATCCAACATTGACTGATTATGACATTCGCTACTACATCTATGAGCTGTTGAAGGC 651 Query 658 ATTGGACTTCTGCCACTCACAAGGAATAATGCACAGAGATGTCAAGCCACACAATGTCAT 717 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 TTTGGACTTCTGCCACTCACAAGGAATAATGCACAGAGATGTCAAGCCACACAATGTCAT 711 Query 718 GATCGACCATGAGCTGCGCAAACTTCGCCTTATAGATTGGGGTCTCGCTGAGTTTTATCA 777 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 712 GATCGACCATGAGCTGCGCAAACTTCGCCTAATAGATTGGGGTCTCGCTGAGTTTTATCA 771 Query 778 TCCTGGAAAAGAGTACAACGTCCGCGTGGCCTCAAGATACTTCAAGGGTCCCGAACTTCT 837 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 772 TCCTGGAAAAGAGTACAACGTCCGTGTGGCCTCAAGATACTTCAAAGGTCCCGAACTTCT 831 Query 838 AGTGGATTTACAGGACTATGACTATTCCTTGGACATGTGGAGCCTTGGTTGCATGTTTGC 897 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 832 AGTTGATTTACAGGACTATGACTATTCCTTGGACATGTGGAGCCTCGGTTGCATGTTTGC 891 Query 898 TGGGATGATATTCCGCAAGGAACCTTTCTTCTATGGCCATGACAACCAGGATCAGCTCGT 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 TGGGATGATATTCCGCAAGGAACCTTTCTTCTATGGCCATGACAACCAGGATCAGCTCGT 951 Query 958 CAAAATTGCCAAGGTACTTGGAACCGATGAATTGAATGCATATCTGAATAAGTATCAGTT 1017 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 952 CAAAATTGCCAAGGTACTCGGAACTGATGAATTGAATGCATATCTGAATAAGTATCAGTT 1011 Query 1018 AGAACTTGATGCTCAACTAGAGGCACTTGTTGGGAGACATAGCAGGAAGCCTTGGTCCAA 1077 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 AGAACTTGATACTCAACTAGAGGCACTTGTTGGGAGACATAGCAGGAAGCCTTGGTCCAA 1071 Query 1078 ATTCATCAACGCCGACAATAGGCATTTGGTCTCACCTGAGGCGATTGATTACCTGGACAA 1137 |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1072 ATTCATCAACGCTGACAATAGGCATTTGGTCTCACCTGAGGCGATTGATTATTTGGACAA 1131 Query 1138 GCTACTCCGGTATGATCATCAAGACAGATTAACCGCAAAAGAAGCAATGGCTCATCCCTA 1197 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1132 GCTGCTCCGGTATGATCATCAAGACAGATTAACTGCAAAAGAAGCAATGGCTCATCCCTA 1191 Query 1198 TTTCGCTCAAGTCAGGGCAGCAGAAAGCAGCAGAATGAGGACTCAATAGAGATGTCTCTG 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1192 TTTCGCTCAAGTCAGGGCAGCAGAAAGCAGCAGAATGAGGACTCAATAGAGATGTCTCGG 1251 Query 1258 TCGATTTT-GTTTCTTCTTCT-C-CAA-TGTGCTCTTTTGTTGTTTACTAAAAATACATT 1313 ||||||| |||||||||||| | | | ||||||||||||||||||||||| |||||| Sbjct 1252 CCGATTTTTGTTTCTTCTTCTTCTCCAGTGTGCTCTTTTGTTGTTTACTAA---TACATT 1308 Query 1314 TTCATATCCATATGGATTTCTTTTGA-AATGTCGCAGTTATTTTAAATTATGGATTTCTA 1372 |||||||||||||||||||||||| | ||||||| | | | |||||||||| || Sbjct 1309 TTCATATCCATATGGATTTCTTTT-ATAATGTCG-A---A----A--TTATGGATTTATA 1357 Query 1373 AATATGAGAACTT-TTATTACT 1393 |||||||||| || |||||||| Sbjct 1358 AATATGAGAA-TTCTTATTACT 1378 > AT2G23080.1 | Symbols: | Protein kinase superfamily protein | chr2:9827113-9829537 FORWARD LENGTH=1311 Length=1311 Score = 883 bits (478), Expect = 0.0 Identities = 831/1001 (83%), Gaps = 26/1001 (3%) Strand=Plus/Plus Query 244 GATGTCGAAAGCTCGTGTGTATACCGATGTTAACG-TGATTCGACCTAAGGATTATTGGG 302 ||||||||||||| | || ||||| |||||||||| || |||| ||||| || ||||||| Sbjct 115 GATGTCGAAAGCTAGGGTTTATACAGATGTTAACGTTG-TTCGTCCTAAAGAGTATTGGG 173 Query 303 ATTACGAATCTCTCAATGTTCAGTGGGGGGAGCAAGATGATTACGAGGTAGTGAGGAAGG 362 | ||||| |||||| |||||| ||||| | ||||||||||| ||||| ||||| || | Sbjct 174 ACTACGAGTCTCTCGTTGTTCAATGGGGTCATCAAGATGATTATGAGGTTGTGAGAAAAG 233 Query 363 TGGGGAGAGGGAAATACAGTGAGGTTTTTGAGGGGATTAACATGAATAGC-AACGAGAAG 421 | || ||||| ||||||||||| ||||| || || | ||| | |||| | || ||| | Sbjct 234 TTGGTAGAGGAAAATACAGTGAAGTTTTCGAAGGCAAAAACGTCAATA-CGAATGAG-CG 291 Query 422 -TGCATTATCAAGATTCTCAAGCCTGTTAAGAAGAAGAAGATTCGA-AGAGAGATTAAAA 479 ||| |||||||||| ||||| || || || |||||||||| | | |||||||| |||| Sbjct 292 TTGCGTTATCAAGATCCTCAAACCCGTAAAAAAGAAGAAGA-TAAAGAGAGAGATCAAAA 350 Query 480 TACTTCAGAATCTCTGTGGAGGGCCGAATATTGTCAAGCTGCT-TGATGTTGTCAGAGAT 538 |||||||||| || ||||| || || |||||||| |||||| | |||| |||| |||||| Sbjct 351 TACTTCAGAACCTATGTGGTGGACCAAATATTGTTAAGCTG-TATGATATTGTTAGAGAT 409 Query 539 CAACACTCAAAAACACCAAGCTTGATATTTGAGTATGTTAACAGTACT-GACTTTAAGGT 597 | ||||| |||||||| |||||| ||||||||| ||| |||||| | |||||||| || Sbjct 410 GAGCACTCCAAAACACCTAGCTTGGTATTTGAGTTTGTCAACAGT-GTGGACTTTAAAGT 468 Query 598 -TCTGTATCCAACATTGACTGATTATGACATCCGATACTACATCTATGAGCTGT-TGAAG 655 | |||||||||||||||||||||| || ||||| ||||| || |||||||| | ||||| Sbjct 469 AT-TGTATCCAACATTGACTGATTACGATATCCGGTACTATATTTATGAGCT-TCTGAAG 526 Query 656 GCATTGGACTTCTGCCACTCACAAGGAATAATGCACAGAGATGTCAAGCCACACAATGTC 715 |||||||| ||||| ||||| |||||||||||||| || ||||| ||||| || |||||| Sbjct 527 GCATTGGATTTCTGTCACTCTCAAGGAATAATGCATAGGGATGTTAAGCCTCATAATGTC 586 Query 716 ATGATCGACCATGAGCTGCGCAAACTTCGCCTTATAGATTGGGGTCTCGCTGAGTTTTAT 775 ||||| || ||| ||||||| |||||||| || ||||||||||| || ||||||||||| Sbjct 587 ATGATAGATCATCAGCTGCGTAAACTTCGTCTGATAGATTGGGGCCTTGCTGAGTTTTAC 646 Query 776 CATCCTGGAAAAGAGTACAACGTCCGCGTGGCCTCAAGATACTTCAAGGGTCCCGAACTT 835 ||||| ||||||||||| || || ||||||||||| |||||||||||||||||||| ||| Sbjct 647 CATCCCGGAAAAGAGTATAATGTTCGCGTGGCCTCGAGATACTTCAAGGGTCCCGAGCTT 706 Query 836 CTAGTGGATTTACAGGACTATGACTATTCCTTGGACATGTGGAGCCTTGGTTGCATGTTT 895 |||| ||| ||||||| ||||||||||| || ||||||||||| ||||||||||||||| Sbjct 707 TTAGTTGATCTACAGGATTATGACTATTCTTTAGACATGTGGAGTCTTGGTTGCATGTTT 766 Query 896 GCTGGGATGATATTCCGCAAGGAACCTTTCTTCTATGGCCATGACAACCAGGATCAGCTC 955 ||||| ||||||||||| |||||||| ||||| ||||||||||| || || ||||| || Sbjct 767 GCTGGCATGATATTCCGTAAGGAACCGTTCTTTTATGGCCATGATAATCATGATCAACTT 826 Query 956 GTCAAAATTGCCAAGGTACTT-GGAACCGATGAATTGA-ATGCA-TATCTGAATAAGTAT 1012 ||||||||||||||||| || |||||| |||| || | || || || || || || ||| Sbjct 827 GTCAAAATTGCCAAGGT-GTTGGGAACCAATGAGTT-AGAT-CATTACCTAAACAAATAT 883 Query 1013 CAGTTAGAACTTGATGCTCAACTAGAGGCACTTGTTGGGAGACATAG-CAGGAAGCCTTG 1071 ||| |||| ||||| ||||||| || ||||||||||| |||||| | | || || || Sbjct 884 CAGCTAGATCTTGACCCTCAACTGGAAGCACTTGTTGGAAGACAT-GTCCCCAAACCATG 942 Query 1072 GTCCAAATTCATCAACGCCGACAA-TAGGCATTTGGTCTCACCTGAGGCGATTGATTACC 1130 |||||| || |||||||| ||||| | |||||||||||||||||||| ||||||| | Sbjct 943 GTCCAAGTTTATCAACGCGGACAACCA-ACATTTGGTCTCACCTGAGGCAATTGATTTTC 1001 Query 1131 TGGACAAGCTACTCCGGTATGATCATCAAGACAGATTAACCGCAAAAGAAGCAATGGCTC 1190 | || ||||| || | ||||||||||||||||||||||||||||| |||||| |||| || Sbjct 1002 TCGATAAGCTTCTTCAGTATGATCATCAAGACAGATTAACCGCAAGAGAAGCCATGGATC 1061 Query 1191 ATCCCTATTTCGCTCAAGTCAGGGCAGCAGAAAGCAGCAGA 1231 |||| || ||||||||||| | || ||||| ||||||||| Sbjct 1062 ATCCATACTTCGCTCAAGTTAAAGCCGCAGAGAGCAGCAGA 1102 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68624145015 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5