BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485385 Length=1469 Score E Sequences producing significant alignments: (Bits) Value AT3G50340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2364 0.0 AT5G67020.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 846 0.0 > AT3G50340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67020.1); Has 128 Blast hits to 128 proteins in 39 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 3; Plants - 76; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:18665094-18666672 REVERSE LENGTH=1579 Length=1579 Score = 2364 bits (1280), Expect = 0.0 Identities = 1414/1478 (96%), Gaps = 12/1478 (1%) Strand=Plus/Plus Query 1 TCTCTCTCGCCTATTATCTTTTT-CAGTTCGCTATCAGACATATCTGAAACCCCATAACT 59 |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1 TCTCTCTCGCCTATCATCTTTTTCCAGTTCGCTATCAGACATATTTGAAACCCCATAACT 60 Query 60 CATAAAGCTTCACTCTTTTCCAC-ATCTCTTACTCCAAAGTTTTGATC-TT-GTCCCaaa 116 ||||||||||||||||||||||| |||||||||||||||||||| || || |||||| Sbjct 61 CATAAAGCTTCACTCTTTTCCACAATCTCTTACTCCAAAGTTTTCTTCTTTCCCCCCAAA 120 Query 117 aaaaaaaaaTGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCGG 176 ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 121 AAATTATAATGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCTG 180 Query 177 GTCTCCGTCGTCTCTCTGCTCGCGCCGCCGCACCAACGACTCCAACGGTTAGAAACAGCC 236 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 181 GTCTCCGTCGTCTCTCTGCTCGCGCCGCCGCACCAACAACACCAACGGTTAGAAACAGTC 240 Query 237 TCGTCTCTTTCTCATCTCTCGCCGAACAAGTAATCTCACACTTACACACTTCAAGGATCC 296 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 241 TCGTCTCTTTCTCTTCTCTCGCCGATCAAGTAATCTCACACTTACACACTTCAAGGATCC 300 Query 297 AAGTCCAACCGGGTCTAACCGACTCCGAATTCGCCAAAGCCGAAGCAGAGTTCGCATTCT 356 |||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||| Sbjct 301 AAGTCCAACCGGGTCTAACCGACTCCGAATTCGCTAGAGCAGAAGCAGAGTTTGCATTCG 360 Query 357 CTTTCCCACCGGACCTCCGTGCAGTTCTCACCGCCGGTTTACCAGTCGGCGCCGGGTTTC 416 |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 361 CTTTTCCACCGGACCTCCGTGCTGTTCTCACCGCCGGTTTACCAGTCGGCGCCGGATTTC 420 Query 417 CAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTTAGGGCTATGATCGATCTTCCTATCG 476 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 421 CAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTCAGAGCTATGATCGATCTTCCTATCG 480 Query 477 CCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTTTGGAGCAAATCTTGGGGTTTAAGAC 536 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 481 CCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTCTGGAGCAAATCTTGGGGTTTAAGAC 540 Query 537 CATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATGCTCTCAAAAGAGCTCCTTTGA 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATGCTCTCAAAAGAGCTCCTTTGA 600 Query 597 TGATACCAATCTTTGATCACTGCTATATTCCTTGTAACCCGTCTTTAGCGGGTAACCCGG 656 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGATACCAATCTTTGATCATTGCTATATTCCTTGTAACCCGTCTTTAGCGGGTAACCCGG 660 Query 657 TTTTTTATATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTATCTGATTTCTTCG 716 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 661 TTTTTTATATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTTTCTGATTTCTTCG 720 Query 717 AGCGTGAGTCTGTGTTTAGAGGGTCTGACACGTGTCCGGTTGTTTTAACGAAGCAGCGTT 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 AGCGTGAGTCTGTGTTTAGAGGGTCTGACACGTGTCCGGTTGTTTTAACGAAGCAGCGTT 780 Query 777 CGGTGAGTGAGAAATCAGCTGGGTCGTCGTCGTCTTCTTCGTCGAATTTTTCAAGAATGA 836 ||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||||| Sbjct 781 CGGTGAGTGAGAAATCAGCCGGGTCGTCGTCGTCTTCTTCATCAAATTTTTCGAGAATGA 840 Query 837 GTTTAGATTCGGGTCAGGTTCACGGGTCGAGTACACCGAGATGGGTTGAGTTTTGGAGTG 896 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GTTTAGATTCGGGTCGGGTTCACGGGTCGAGTACACCGAGATGGGTTGAGTTTTGGAGTG 900 Query 897 ACGCGACCGTGGATCGTCGGAGGAGAAACTCTGCTTCTTCTATGTCGTCGTCACACTCTT 956 ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 ACGCGGCGGTTGATCGTCGGAGGAGAAACTCTGCTTCTTCTATGTCGTCGTCACACTCTT 960 Query 957 CATCGCCGGAGAGATATCTAGAATTACCAAGATCCGAGACACCGAAATGGGTCGACGATT 1016 ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 961 CATCGCCGGAGAGATATTTAGATTTACCAAGATCCGAGACACCGAAATGGGTCGACGATT 1020 Query 1017 ACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGGAGCGAATCCGACGTTGATG 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 ACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGGAGCGAATCCGACGTTGATG 1080 Query 1077 ATATTGTCCACGTGTCAGCATCTGGTTTCTTTGAGGGTGAAATGGTAATTTTAGATAATC 1136 ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1081 ATATTGTACACGTGTCAGCATCTGGTTTTTTTGAGGGTGAAATGGTAATTTTGGATAATC 1140 Query 1137 AAGCGGTT-TTAGATGCATTGCTTTTGAAAGCGGGTCGGTTCTCGGAGTCGCTCCGAAAA 1195 |||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1141 AAGCCGTTCTT-GATGCATTGCTTTTGAAAGCGGGTCGGTTCTCGGAGTCGCTCCGAAAA 1199 Query 1196 GCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGTTTTGATTTTCGACCGGAGAAG 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 GCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGTTTTGATTTTCGACCGGAGAAG 1259 Query 1256 GGGAAGAAACCGGTGAAGAAGCTATCTCCTGAACTTGTCCAACGAATCGGGAAACTTGCT 1315 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 GAGAAGAAACCGGTGAAGAAGCTATCTCCTGAACTTGTCCAACGAATCGGGAAACTTGCT 1319 Query 1316 GAGTCGGTTTCTCGGTCATGATTATTA--CCC-GATCGAGATTCTTTAAACTTCTAATTA 1372 ||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||||| Sbjct 1320 GAGTCGGTTTCTCGGTCATGATTATTATTCCCCGATCGAGATTCTTTTCACTTTTAATTA 1379 Query 1373 CCCCTCAAAAGAATACATTTATTATAAA-AACACACCATTAGATTTTAACGTTTTCAAAA 1431 ||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1380 GACCTCAAAC-AATACGTTTATTAAAAACAACACACCATTAGATTTTAACGTTTTCAAAA 1438 Query 1432 AAGTCTAAATATGTGTAATCTTGCATTTGTTATTAGAA 1469 | ||||||||||||||||||||||||| |||||||||| Sbjct 1439 A-GTCTAAATATGTGTAATCTTGCATTCGTTATTAGAA 1475 > AT5G67020.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26749850-26751249 FORWARD LENGTH=1400 Length=1400 Score = 846 bits (458), Expect = 0.0 Identities = 996/1244 (80%), Gaps = 83/1244 (7%) Strand=Plus/Plus Query 121 aaaaaTGGTCGACGTTGATCGGAGAATGACCGGTCTCAGACCAGCTCACGCCGCGGGTCT 180 ||| |||||||||||||| ||||||||||||||| | | || |||||||| || ||||| Sbjct 109 AAACATGGTCGACGTTGACCGGAGAATGACCGGTTTGACTCCGGCTCACGCAGCCGGTCT 168 Query 181 CCGTCGTCTCTCTGCTCGCGCCGCCGCACCAACGACTCCAACGGTTAGAAACAGCC-TCG 239 ||| |||||||| |||||||||||||| ||| | ||||| ||| | |||||||||| || Sbjct 169 CCGCCGTCTCTCAGCTCGCGCCGCCGCTCCATCCACTCCTACGATCAGAAACAGCCTTC- 227 Query 240 TCTCTTTCTCATCTCTCGCCGA-ACAAGTAATCTCA-CA-CTTACACACTTCAAGG-ATC 295 |||||||| || ||||||| | |||||||| | || |||| | | ||| ||| ||| Sbjct 228 AATCTTTCTCCCCTTTCGCCGATA-AAGTAATC-AATCATCTTA-AAAATTC-AGGTATC 283 Query 296 CAAGTCCAACCGGGTCTAACCGACTCCGAATTCGCCAAAGCCGAAGCAGAGTTCGCATTC 355 || ||||||| ||||| ||||| |||| || ||| || |||||| ||||| | ||| Sbjct 284 AAAATCCAACCAGGTCTCTCCGACACCGAGTTTGCCCGAGTCGAAGCCGAGTTTGGTTTC 343 Query 356 TCTTTCCCACCGGACCTCCGTG-CAGTTCTCACCGCCGGT-T-TACCAGTCGGCGCCGGG 412 | ||||||||||||||||||| | | ||| |||||||| | | || |||||||| || Sbjct 344 ACCTTCCCACCGGACCTCCGTGTTA-TCCTCTCCGCCGGTCTCT-CC-GTCGGCGCAGGA 400 Query 413 TTTCCAGACTGGCGTTCTCCCGGAGCTCGTCTTCATCTTAGGGCTATGATCGATCTT-CC 471 || ||||||||||||||||||||||||||||| || || | || ||||||||| || || Sbjct 401 TTCCCAGACTGGCGTTCTCCCGGAGCTCGTCTCCACCTCCGTGCCATGATCGAT-TTACC 459 Query 472 TA-TCGCCGCCGTGTCGTTTCAGATCGCGAGAAACACTCTTTGGAGCAAATCTTGGGG-T 529 | ||||||| || ||||| || ||||| | ||||| ||| ||| ||||||||||||| | Sbjct 460 -AGTCGCCGCTGTATCGTTCCAAATCGCTAAAAACAGTCTCTGGTGCAAATCTTGGGGCT 518 Query 530 TTAAGACCATCCGACCCGGAAAAAGCTTTACGGGTCGCGAGAAATG-CTCTCAAAAGAGC 588 | || |||| |||||||||||||||||||| ||||||||||||| | || | |||||||| Sbjct 519 TGAA-ACCACCCGACCCGGAAAAAGCTTTAAGGGTCGCGAGAAACGCCT-TAAAAAGAGC 576 Query 589 TCCTTTGA-TGATACCAATCTTTGATCACTGCTATATTCCTTGTAACCCGTCTTTAGCGG 647 |||||| | |||| || ||||||||||||||||| ||||||||||||||||||||||| | Sbjct 577 TCCTTT-ACTGATTCCCATCTTTGATCACTGCTACATTCCTTGTAACCCGTCTTTAGCTG 635 Query 648 GTAACCCGGTTTT-TTATATTGACGAGACCCGGATTTTCTGTTGCGGGTCGGATCTATCT 706 |||| |||||||| || || |||||||| ||||| ||||||||||||||||||||||| Sbjct 636 GTAATCCGGTTTTCTTC-ATCGACGAGACTCGGATCTTCTGTTGCGGGTCGGATCTATCC 694 Query 707 GATTTCTTCGAGCGTGAGTCTG-TGTTTAGAGGGTCTGACACGTGT-CCGGTTGT-TT-T 762 || |||||||||||||| |||| | ||| || | ||||| | | | || | | || | Sbjct 695 GAGTTCTTCGAGCGTGAATCTGCT-TTTCGAAGCTCTGA-AT-TCTTCCCGA-GAATTCT 750 Query 763 AACGAAGCAGCGTTCGGTGAGTGAGAAATCAGCTGGGTCGTCGTCGTCTTCTTCGTCGAA 822 || ||||| ||||| ||||| |||||||||||||| || || | || | || Sbjct 751 CACTAAGCAACGTTCAGTGAGCGAGAAATCAGCTGGATCATC--C-TC------G---AA 798 Query 823 TTTTTCAAGAATGA-GTTTAGATTCGGGTCAGGTTCACGG-GTCGAGTACAC-CGAGATG 879 |||||| | | || | ||||||| ||||| || | | || | || ||| | ||||||| Sbjct 799 TTTTTCCCGGA-GAAGCTTAGATTTGGGTCGGGCTAATGGTG-CGGGTA-AGTCGAGATG 855 Query 880 GGTTGAGTTTTGGAGTGACGCGACCGTGGATCGTCGGAGGAGAAACTCTGCTTCTTCTAT 939 |||||||||||||||||||||| | || |||||| | || |||||||||| || | || Sbjct 856 GGTTGAGTTTTGGAGTGACGCGGCGGTTGATCGTTGCCGGCGAAACTCTGCCTCCAC-AT 914 Query 940 G-TCGTCGTCACACTCTTCATCGCCGGAGAGATATCTAGAATTACCAAGATCCGAGACAC 998 |||||||| |||||||||||||| | || |||| | | ||||| | Sbjct 915 CATCGTCGTCT---TCTTCATCGCCGGACC--T-TC--------CCAAAA-CAGAGACTC 959 Query 999 CGAAATGGGTCGA-CGATTACGTGAACCGGATCGGGTCGGTTTTAAGAGGAGGCGGGTGG 1057 |||||||||| || | | ||||| ||||||||||| |||||||||||| ||||||||||| Sbjct 960 CGAAATGGGT-GAACCAGTACGTAAACCGGATCGGTTCGGTTTTAAGAAGAGGCGGGTGG 1018 Query 1058 AGCGAATCCGACGTTGATGATATTGTCCACGTGTCAGCATCTGGTTTCTTTGAGGGTGAA 1117 ||||||||||| ||||||| ||| |||||||||||||||| |||||||||||||| ||| Sbjct 1019 AGCGAATCCGATATTGATGAGATTATCCACGTGTCAGCATCGGGTTTCTTTGAGGGCGAA 1078 Query 1118 ATGGTAATTTTAGATAATCAAGCGGTT-TTAGATG--CATTGCTTTTGAAAGCGGGTCGG 1174 ||||||||| | ||||||||| | ||| || |||| | || || || |||||||||||| Sbjct 1079 ATGGTAATTATCGATAATCAAACTGTTCTT-GATGTGC-TT-CTATTAAAAGCGGGTCGG 1135 Query 1175 TTCTCGGAGTCGCTCCGAAAAGCTGGATGGAGCTCCGAAGAAGTATCGGATGCACTTGGT 1234 |||| ||||||||||| ||| | || ||||||||||||||||| ||||| || ||||| Sbjct 1136 ATCTCAGAGTCGCTCCGTAAATCCGGGTGGAGCTCCGAAGAAGTCTCGGACGCGCTTGGG 1195 Query 1235 TTTGATTTTCGACCGGAGAAGGGGAAGAAACCGGTGAAGAAGCTATCTCCTGAA-CTTGT 1293 ||||||||||||||||| |||| || ||||||||| ||||| || || ||| | || || Sbjct 1196 TTTGATTTTCGACCGGAAAAGGAGAGGAAACCGGTTAAGAAACTCTCGCCT-ATGCTCGT 1254 Query 1294 CCAACGAAT-CGGGAAACTTGCTGAGTCGGTTTCTCGGTCATGA 1336 | ||| ||| || ||||||||||| | |||||||| ||||||| Sbjct 1255 CGAAC-AATTCGAAAAACTTGCTGAATGGGTTTCTCAGTCATGA 1297 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72439386435 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5