BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485410
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50630.1 | Symbols: KRP2, ICK2 | KIP-related protein 2 | chr... 880 0.0
> AT3G50630.1 | Symbols: KRP2, ICK2 | KIP-related protein 2 | chr3:18800380-18801587
FORWARD LENGTH=979
Length=979
Score = 880 bits (476), Expect = 0.0
Identities = 639/713 (90%), Gaps = 30/713 (4%)
Strand=Plus/Plus
Query 1 AGAGAGAGAGATCTTGAAGGTGACGTCGTCGGAGATTATGGCGGCGGTTAGGAGAAGAGA 60
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 92 AGAGATAGAGATCTGGAAGGTGACGTCGTAGGAGATTATGGCGGCGGTTAGGAGAAGAGA 151
Query 61 AGGAGATGTGGTTGATGAAAATGGAGTTGCGACGACGACGGTGAAGCGGAGGAAGATGGA 120
| ||||||||||||| || ||||||||| |||||||||||||||| || |||||||||||
Sbjct 152 ACGAGATGTGGTTGAAGAGAATGGAGTTACGACGACGACGGTGAAACGAAGGAAGATGGA 211
Query 121 GGAGGAGGTGGATGTT-GTAGAATCGAGGCTAGTTTTGTCACCGTCTGTACAGGCGACGA 179
|||||| |||||| || || ||||| ||| || || |||| |||| ||||||||||||||
Sbjct 212 GGAGGAAGTGGAT-TTAGTGGAATCTAGGATAATTCTGTCTCCGTGTGTACAGGCGACGA 270
Query 180 ATCGCGTTGGAATAGTGGCGAGGAATTCAGCAGGAGCGTCGGAGATGAGTGTTGTTATAG 239
|||||| |||||| |||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 271 ATCGCGGTGGAATTGTGGCGAGAAATTCAGCAGGAGCGTCGGAGACGAGTGTTGTTATAG 330
Query 240 TTCGACGGCGAGATTCTCCTCCTGTTGAAGAACAATGTCAAATC------G-A-A----- 286
| |||||||||||||||||||| ||||||||||| ||||||||| | | |
Sbjct 331 TACGACGGCGAGATTCTCCTCCGGTTGAAGAACAGTGTCAAATCGAAGAAGAAGATTCGT 390
Query 287 --GTTTCGTGTTGTTCTAGATCGGAAGAGAAATCGAAACGGAGAATCGAATTTGTAGATG 344
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 391 CGGTTTCGTGTTGTTCTACATCGGAAGAGAAATCGAAACGGAGAATCGAATTTGTAGATC 450
Query 345 TTGAGGAAAATAACGGTGATGATCATGAAACTGTAACGTCGTGGATTTATGATGATTTTA 404
||||||||||||||||||| |||| |||||| | ||||||||||||||| |||||||| |
Sbjct 451 TTGAGGAAAATAACGGTGACGATCGTGAAACAGAAACGTCGTGGATTTACGATGATTTGA 510
Query 405 ATAAGAGTGAGGAATCGATGAACATGGATTCTTCTTCGGCGGCTGTAGAAGATGATGTAG 464
||||||||||||||||||||||||||||||||||||||| |||||| | | | |||||||
Sbjct 511 ATAAGAGTGAGGAATCGATGAACATGGATTCTTCTTCGGTGGCTGTTG-A-A-GATGTAG 567
Query 465 AGTCTCGCCGTC-GGTTAAGGAAGAGCCGCCATGAGACGGTGAAAGAAGCTGAGCTAGAA 523
|||||||||| | ||||||||||||| | ||||||||||||||| ||||||||| |||||
Sbjct 568 AGTCTCGCCG-CAGGTTAAGGAAGAGTCTCCATGAGACGGTGAAGGAAGCTGAGTTAGAA 626
Query 524 GA-TTTTTTCCAAACGGCGGAGAAAGATCTTCGGAATAAGATGTTGGAATGTTCTATGAA 582
|| |||||| || ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 627 GACTTTTTT-CAGGTGGCGGAGAAAGATCTTCGGAATAAGTTGTTGGAATGTTCTATGAA 685
Query 583 GTATAACTTCGATTTCGAGAGAGATGAGCCACTTGGTGGAGGAAGATACGAGTGGGTTAA 642
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 686 GTATAACTTCGATTTCGAGAAAGATGAGCCACTTGGTGGAGGAAGATACGAGTGGGTTAA 745
Query 643 ATTGAATCCATGAAGAAGACGATGAT--TA-TGAT---CATTATTTTCACCAA 689
|||||||||||||||||||||||||| || |||| |||| ||||||||||
Sbjct 746 ATTGAATCCATGAAGAAGACGATGATGATAATGATGATCATTGTTTTCACCAA 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33355473608
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5