BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485414
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribon... 2364 0.0
> AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonucleoprotein-70K
| chr3:18826300-18829618 REVERSE LENGTH=1586
Length=1586
Score = 2364 bits (1280), Expect = 0.0
Identities = 1454/1533 (95%), Gaps = 31/1533 (2%)
Strand=Plus/Plus
Query 45 AAAATCCTCCATCCGCTTCCTTCACGAAAAACCCTAGCAGAGCTCCGAGATCTC-TTTGT 103
|||||||||||||||||||| |||||||||||||||||| |||||||||||| | |||||
Sbjct 64 AAAATCCTCCATCCGCTTCC-TCACGAAAAACCCTAGCACAGCTCCGAGATCCCTTTTGT 122
Query 104 TGCCATGGGAGACTCCGGCGATCCTTTCATGCGTAACCCTAACGCCGCCGTTCAGGCCCG 163
||||||||||||||||||||||||||| ||||||| || |||||||| ||||| || ||
Sbjct 123 CGCCATGGGAGACTCCGGCGATCCTTTCTTGCGTAATCCAAACGCCGCTGTTCAAGCTCG 182
Query 164 CGCTAAAGTTCAGAACAGAGCCAATGTTCTTCAGCTTAAGCTGATGGGTCAAAGCCACCC 223
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 183 CGCTAAAGTTCAGAACAGAGCCAATGTTCTTCAGCTTAAGCTGATGGGTCAGAGCCACCC 242
Query 224 TACTGGCTTAACAAACAATCTCTTGAAGCTCTTTGAGCCACGGCCGCCATTGGAGTACAA 283
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 243 TACTGGCTTAACAAACAATCTCTTGAAGCTTTTTGAGCCACGTCCGCCATTGGAGTACAA 302
Query 284 ACCACCACCTGAGAAGAGAAAGTGCCCGCCTTATACAGGTATGGCTCAGTTTGTGAGTAA 343
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 303 ACCACCACCAGAGAAGAGAAAGTGCCCGCCTTATACAGGTATGGCTCAGTTTGTAAGTAA 362
Query 344 CTTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTAAGCCAGAAGTTGAATTACCTTC 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CTTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTAAGCCAGAAGTTGAATTACCTTC 422
Query 404 GCAGAAAAGGGAGCGAATTCATAAATTACGACTGGAGAAAGGTGTTGAAAAGGCTGCGGA 463
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 423 GCAGAAAAGGGAAAGAATTCATAAATTGCGACTGGAGAAAGGTGTTGAAAAGGCTGCTGA 482
Query 464 GGACTTAAAGAAATATGACCCGAATAATGATCCAAATGCTACTGGAGATCCATACAAGAC 523
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 483 GGACTTAAAGAAATATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGAC 542
Query 524 ATTGTTCGTTTCAAGACTTAACTACGAATCCTCTGAGAGTAAGATTAAAAGGGAGTTTGA 583
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 543 ATTGTTCGTTTCAAGACTTAACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGA 602
Query 584 ATCTTATGGACCAATTAAACGGGTTCATTTGGTGACTGATCAGCTGACCAATAAACCCAA 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ATCTTATGGACCAATTAAACGGGTTCATTTGGTGACTGATCAGCTGACCAATAAACCCAA 662
Query 644 AGGATATGCTTTCATTGAGTACATGCACACCCGTGACATGAAAGCTGCATATAAGCAAGC 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 AGGATATGCTTTCATTGAGTACATGCACACCCGTGACATGAAAGCTGCATATAAGCAAGC 722
Query 704 TGATGGACAAAAGATTGACGGCAGAAGAGTTTTGGTTGATGTTGAGAGAGGTAGAACCGT 763
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 723 TGATGGACAAAAGATTGACGGCAGAAGAGTTTTGGTTGATGTGGAGAGAGGTAGAACCGT 782
Query 764 CCCAAACTGGCGTCCACGCAGGCTTGGTGGTGGACTTGGGACCTCAAGAATCGGTGGTGG 823
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 783 CCCAAACTGGCGTCCACGCAGGCTTGGTGGTGGACTTGGGACCTCAAGAGTGGGTGGTGG 842
Query 824 TGAAGAAATTGTTGGGGAACAACAACCGCAAGGAAGAACCTCCCAGTCAGAGGAGCCATC 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TGAAGAAATTGTTGGGGAACAACAACCGCAAGGAAGAACCTCCCAGTCAGAGGAGCCATC 902
Query 884 GAGACCACGGGAAGAGCGTGAGAAATCTCGGGAAAAGGGAAAAGAAAGGGAACGAGAAAG 943
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 903 GAGACCACGGGAAGAGCGTGAGAAATCTCGGGAAAAGGGAAAAGAAAGGGAA--AG---G 957
Query 944 GTCGCGTGAGCTGTCTCATGAACAACCTCGAGAGCGGTCTCGTGACAGGCCGAGAGAGGA 1003
|| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 958 -TCTCGTGAGCTGTCTCACGAACAACCTCGAGAGAGGTCTCGTGACAGACCGAGAGAGGA 1016
Query 1004 TAAGCACCACAGAGACCGAGACCAAGCAGGCAGAGACAGGGATAGAGACAGTAGACGTGA 1063
|||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 1017 TAAGCACCACAGAGACCGAGACCAAGGAGGCAGAGACAGGGATAGGGACAGCAGACGTGA 1076
Query 1064 TCGTGACCGGACCCGTGATAGAGGAGACAGAGACCGCCGTGACCGTGACAGGGGACGGGA 1123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCGTGACCGGACCCGTGACAGAGGAGACAGAGACCGCCGTGACCGTGACAGGGGACGGGA 1136
Query 1124 TCGTACTTCAAGGGATCATGATCGAGACCGTAGTAGAAAGAAGGAGAGGGATTATGAAGG 1183
||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct 1137 TCGTACTTCAAGGGATCATGACCGAGACCGCAGTAGAAAGAAGGAGCGGGATTATGAAGG 1196
Query 1184 AGGTGAATATGAGCATGAGGGTGGTGGTCGGTCCCGTGAAAGAGATGCAGAGTACAAACG 1243
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1197 AGGTGAATATGAGCATGAGGGTGGTGGTCGGTCCCGTGAGAGAGATGCAGAGTAC---CG 1253
Query 1244 TGGCGAGCCAGAAGAAACGCATGGCTACTACGAAGAAGATCAAGGGGACACAGACCGGTA 1303
|||||||||||||||||| | ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1254 TGGCGAGCCAGAAGAAACTCGTGGCTACTATGAAGACGATCAAGGGGACACAGACCGGTA 1313
Query 1304 CAGTCATCGCTACGATAAAATGGAGGAAGATGACTTCAGATATGAACGCGAGTACAAGCG 1363
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1314 CAGTCATCGCTACGATAAAATGGAGGAAGATGACTTCAGATATGAACGTGAGTACAAGCG 1373
Query 1364 GTCTAAGAGATCAGAATCGCGAGAGTATGTTCGTTGATGTTTCATTCGGTTGTTTAAAAC 1423
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1374 GTCTAAGAGATCAGAATCGCGAGAGTATGTTCGTTGATGTTTCATTCGGCTGTTTAAAAC 1433
Query 1424 TCTAAAA-CTTAAGAATC-TTTTT-T--A----AA--C----CT-GATGCGATTCTGTTT 1467
||||||| |||||||||| ||||| | | || | || ||||| |||||||||
Sbjct 1434 TCTAAAAACTTAAGAATCCTTTTTGTTTATTCTAAATCAAAACTTGATGCAATTCTGTTT 1493
Query 1468 GTTACCGCTGAACTTGATTGCTATTTTTTCTCTTTTGAAGTT-GTCATATTAT-ATT-AA 1524
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 1494 GTTACCTCTGAACTTGATTGCTATTTTTTCTCTTTTGAAGTTTGTCATATTATTAATCAA 1553
Query 1525 A-TCGAACCGACTTAAAAGTTGTGATGTTCTAT 1556
| || |||| |||| |||||||||||||| |||
Sbjct 1554 AATCAAACCAACTTTAAAGTTGTGATGTTTTAT 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76806833850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5