BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485421
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT3G50750.1 | Symbols: BEH1 | BES1/BZR1 homolog 1 | chr3:188618... 1434 0.0
> AT3G50750.1 | Symbols: BEH1 | BES1/BZR1 homolog 1 | chr3:18861839-18863234
REVERSE LENGTH=1311
Length=1311
Score = 1434 bits (776), Expect = 0.0
Identities = 1036/1154 (90%), Gaps = 47/1154 (4%)
Strand=Plus/Plus
Query 1 CATATAAATACGAAA-TTTCCTCCATTAAAATTAtttaacttttgcctcttttttctcct 59
||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct 1 CATATAAATACGAAACTTT-CTCTATTAAAATTATTTAACTTTTGCCTCTCTTTTCTCCT 59
Query 60 cttgaaggaaaattctttagtc-ttttttctctcctcGAGAATTACGCaaacacaaaaaa 118
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 60 CGTGAAGGAAAATTCTTTAGTCATTTTTTCTCTCCTCGAGAATTACGCAAACACAACAAA 119
Query 119 taactca-aaactgaaaagttaaaaaa-aaaaaCAGAGAGGGAGAGGAATGATGGCATCA 176
||| || | | ||||||| ||||||| ||||||||||| || || | ||| | | |
Sbjct 120 -AACCCAGACATTGAAAAG-TAAAAAACAAAAACAGAGA--AAGTGGGA-GATAG-AAGA 173
Query 177 GGA-GG-AGGAGAAGGAGGATCAACGGCGGCGACGGGGAGGATGCCGACGTGgaaagaga 234
|| || | || |||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 174 TGACGGCATCAGGAGGAGGATCAACGGCGGCGACGGGGAGGATGCCGACGTGGAAGGAAA 233
Query 235 gagagaacaacaa-aaggagagaaagaagaagaagagCAATAGCAGCTAAAATATTCACC 293
||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 234 GAGAGAACAACAAGAA-GAGAGAAAGAAGAAGAAGAGCAATAGCAGCTAAAATCTTCACC 292
Query 294 GGACTTAGATCTCAGGGCAATTATAAACTCCCTAAACACTGTGACAACAATGAAGTCCTT 353
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 293 GGACTTAGATCTCAAGGCAATTATAAACTTCCTAAACACTGTGACAACAATGAAGTCCTC 352
Query 354 AAAGCACTTTGTCTCGAAGCTGGTTGGGTCGTTCACGAAGATGGCACCACTTATCGAAAG 413
||||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 353 AAAGCTCTTTGTCTTGAAGCTGGTTGGATCGTTCATGAAGATGGCACCACTTATCGAAAG 412
Query 414 GGTTCTCGACCAACAGAAGCAACACCGTTGTGTTCGTCAATTCAACTTAGCCCACAATCA 473
|||||||||||||||||| ||||| | |||||||||||| |||||||| |||||||||
Sbjct 413 GGTTCTCGACCAACAGAAACAACAGTGCCGTGTTCGTCAATCCAACTTAGTCCACAATCA 472
Query 474 TCGGCCTTTCAAAGCCCAATTCCGTCGTACCAAGCTAGCCCATCATCGTCGTCTTACCCA 533
||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||
Sbjct 473 TCGGCCTTTCAAAGCCCAATTCCTTCGTATCAAGCTAGCCCTTCATCGTCATCTTACCCA 532
Query 534 AGTCCGACCCGATTTGATCACATTCCAAACCGATTTGACCCGAATCAATCCTCGACTTAT 593
|||||||||| | | |||||||||||||||||||||||||||
Sbjct 533 AGTCCGACCC-----G---------------G-TTTGACCCGAATCAATCCTCGACTTAT 571
Query 594 CTCATTCCTTATCTACAAAACCTTGCTTCATCAGGAAACCTCGCTCCTCTACGAATTTCC 653
|||||||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 572 CTCATTCCCTATCTCCAAAACCTAGCTTCGTCTGGAAACCTCGCTCCTCTACGAATTTCC 631
Query 654 AATAGTGCCCCTGTTACACCGCCGATTTCTTCACCTAGAGGGTCAAATCCGAGACTTTCG 713
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 632 AATAGTGCCCCTGTTACACCGCCGATTTCTTCACCTAGAAGATCAAATCCGAGACTTCCG 691
Query 714 AGATGGCAAAGTAGTAATTTTCCAGTCTCGGCTCCGTCAAGCCCAACGCGGCGTCTCCAC 773
||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 692 AGATGGCAAAGCAGTAATTTCCCAGTCTCAGCTCCGTCAAGCCCAACACGGCGTCTCCAT 751
Query 774 CACTATACATCGATTCCAGAATGCGATGAATCGGATATTTCGACGGTTGATTCGTGTCGA 833
||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 752 CACTACACATCGATTCCAGAATGCGATGAATCGGATGTTTCGACGGTTGATTCTTGTCGA 811
Query 834 TGGGGAAATTTCCAACCGGGTAACGTTTCTCAGACATGTCCTCCGTCGCCGACTTTTAAC 893
||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 812 TGGGGAAATTTCCAATCGGTTAACGTTTCTCAGACATGTCCTCCGTCGCCGACATTTAAC 871
Query 894 CTCGTCGGAAAAAGCGTTAACGGCGGGGGAGGT-GACGTGTCGGTGAAGCCGTGGGAAGG 952
|| |||||||||||||||| | || |||| | || |||||||||||||||||||||||
Sbjct 872 CTGGTCGGAAAAAGCGTTAGCTCCGTCGGAG-TAGATGTGTCGGTGAAGCCGTGGGAAGG 930
Query 953 TGAGAAGATTCACGATGTTGGTATCGATGACTTGGAGCTGACGTTAGGTAACAACACCAA 1012
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 931 TGAGAAGATTCACGATGTTGGTATCGATGACTTGGAGCTGACGCTAGGTCACAACACCAA 990
Query 1013 AGGACGCGGCTAGGTTAATATCGTAGTTTTAACTATTTAGTCGGGTCCGGTACGGGATTT 1072
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||
Sbjct 991 AGGACGCGGCTAGGTTAATATCGTGGTTT-AACTATTTAGTCGGGTCCGGTACGAGATT- 1048
Query 1073 GGTTCCGGTTTAACCGTAGCTAATAGGTTGGTCTTGGTCTTAGTCTTCATGACTATTT-G 1131
|||||||||| || |||||||||||| |||||||| | |||||||||||||||| |
Sbjct 1049 GGTTCCGGTTAAATCGTAGCTAATAGATTGGTCTT--T----GTCTTCATGACTATTTTG 1102
Query 1132 TACAGTCATTATCA 1145
||||||||||||||
Sbjct 1103 TACAGTCATTATCA 1116
Score = 65.8 bits (35), Expect = 9e-10
Identities = 38/39 (97%), Gaps = 1/39 (3%)
Strand=Plus/Plus
Query 1163 TTTT-TATGTAATGGTGGATAATGAAAAATGCAAGTGTG 1200
|||| ||||||||||||||||||||||||||||||||||
Sbjct 1156 TTTTATATGTAATGGTGGATAATGAAAAATGCAAGTGTG 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5