BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485476
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51240.1 | Symbols: F3H, TT6, F3'H | flavanone 3-hydroxylase... 2191 0.0
AT3G51238.1 | Symbols: | other RNA | chr3:19025110-19026779 RE... 784 0.0
> AT3G51240.1 | Symbols: F3H, TT6, F3'H | flavanone 3-hydroxylase
| chr3:19025192-19026872 FORWARD LENGTH=1508
Length=1508
Score = 2191 bits (1186), Expect = 0.0
Identities = 1359/1443 (94%), Gaps = 10/1443 (1%)
Strand=Plus/Plus
Query 1 GTGGTAGGTAGCTAGCGACCTCTTCGTTCTTCAGTCATCACAAGCTTTGAAAGGTTTTCA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 73 GTGGTAGGTAGCTAGCGACCTCTTCGTTCGTCAGTCATCACAAGCTTTGAAAGATTTTCA 132
Query 61 GCTACCACTCTCTTC-TTATATATTCATTACACATCTCTTCTCTCTATCTGTCCCTTAAT 119
||||||||||||| | |||||||||||||||||||||||||| ||||| | || ||||||
Sbjct 133 GCTACCACTCTCTCCTTTATATATTCATTACACATCTCTTCTTTCTATATCTCTCTTAAT 192
Query 120 TTAGTCCTTTGTTTTTGTAATTACAATGGCTCCAGGAACTTTGACTGAGCTCGCCGGAGA 179
|||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 193 TTAGTCTTTTGTCTTCGTAATTACAATGGCTCCAGGAACTTTGACTGAGCTAGCCGGAGA 252
Query 180 GTCTAAGCTCAACTCTAAATTCGTCCGGGACGAGGACGAACGCCCCAAAGTCGCTTACAA 239
||||||||||||||||||||| ||| ||||||| || ||||| |||||||||||||||||
Sbjct 253 GTCTAAGCTCAACTCTAAATTTGTCAGGGACGAAGATGAACGGCCCAAAGTCGCTTACAA 312
Query 240 TGAGTTTAGCGACGAAATCCCGGTGATCTCTCTCGCCGGTATCGATGATGTCGATGGAAA 299
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 313 TGTGTTTAGCGACGAAATCCCGGTGATCTCTCTCGCCGGTATCGATGACGTCGATGGAAA 372
Query 300 AAGAGGAGAGATCTGCCGTCAGATCGTGGAGGCTTGTGAGAATTGGGGCATCTTCCAAGT 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 373 AAGAGGAGAGATCTGCCGTCAGATCGTTGAGGCTTGTGAGAATTGGGGCATCTTCCAAGT 432
Query 360 GGTCGATCACGGCGTCGATACTAACTTGGTAGCGGATATGACTCGTCTCGCTCGTGACTT 419
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 433 GGTCGATCACGGCGTCGATACTAACTTAGTGGCGGATATGACTCGTCTCGCTCGTGACTT 492
Query 420 CTTCGCTTTACCTCCGGAGGAAAAGCTCCGTTTCGACATGTCCGGTGGTAAAAAAGGAGG 479
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 493 CTTTGCTTTACCTCCGGAAGACAAGCTCCGTTTCGACATGTCCGGTGGTAAAAAAGGAGG 552
Query 480 GTTCATTGTCTCTAGTCACCTCCAGGGAGAGGCTGTGCAAGATTGGAGAGAGATAGTGAC 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 553 ATTCATCGTCTCTAGTCACCTCCAGGGAGAGGCTGTGCAAGATTGGAGAGAGATTGTAAC 612
Query 540 GTATTTCTCGTATCCGGTGAGAAACAGAGACTTCTCACGGTGGCCAGATAAGCCGGAAGG 599
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 613 GTATTTCTCGTACCCGGTGAGAAACAGAGACTACTCACGGTGGCCAGATAAGCCGGAAGG 672
Query 600 ATGGGTGAAAGTGACGGAGGAGTATAGTGAGAGGCTTATGAGTTTGGCTTGTAAGCTTCT 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TTGGGTGAAAGTGACGGAGGAGTATAGTGAGAGGCTTATGAGTTTGGCTTGTAAGCTTCT 732
Query 660 TGAGGTTTTGTCTGAAGCTATGGGTCTTGAGAAAGAGTCTCTTACCAATGCATGCGTCGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TGAGGTTTTGTCTGAAGCTATGGGTCTTGAGAAAGAGTCTCTTACCAATGCATGCGTCGA 792
Query 720 TATGGACCAAAAGATTGTTGTTAATTATTATCCAAAATGCCCTCAGCCTGACCTTACTCT 779
|||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||
Sbjct 793 TATGGACCAAAAGATTGTTGTTAATTATTACCCAAAATGCCCTCAGCCTGATCTCACCCT 852
Query 780 CGGACTCAAGCGTCACACTGACCCTGGAACCATTACTTTGCTGCTCCAAGACCAAGTCGG 839
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 853 CGGACTCAAGCGTCACACTGACCCTGGAACCATTACCTTGCTGCTACAAGACCAAGTCGG 912
Query 840 TGGACTACAAGCCACACGTGACAATGGCAAGACGTGGATTACGGTCCAGCCTGTTGAAGG 899
|||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 913 TGGATTACAAGCCACACGTGACAATGGCAAGACATGGATTACGGTTCAGCCTGTTGAAGG 972
Query 900 AGCGTTTGTAGTCAATCTCGGCGACCACGGTCATTTTCTGAGCAATGGGAGGTTCAAGAA 959
||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 973 AGCGTTTGTCGTCAATCTCGGCGACCACGGCCATTTTTTGAGCAATGGGAGGTTCAAGAA 1032
Query 960 TGCTGATCATCAGGCGGTGGTGAACTCAAACTCGAGTAGACTATCCATAGCTACGTTCCA 1019
||||||||||||||| ||||||||||| |||||||| ||| |||||||||| ||||||||
Sbjct 1033 TGCTGATCATCAGGCCGTGGTGAACTCTAACTCGAGCAGATTATCCATAGCCACGTTCCA 1092
Query 1020 GAATCCGGCCCCCGATGCCACCGTGTATCCACTTAAAGTAAGAGAAGGAGAGAAGCCGAT 1079
||| || || || |||||||| ||||||||||| ||||||||||||||||||||| | ||
Sbjct 1093 GAACCCCGCGCCGGATGCCACAGTGTATCCACTGAAAGTAAGAGAAGGAGAGAAGGCAAT 1152
Query 1080 CTTGGAGGAGCCAATCACGTTTGCTGAGATGTATAAGAGAAAGATGGGAAGAGATCTGGA 1139
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1153 ATTGGAGGAGCCAATCACGTTTGCCGAGATGTATAAGAGAAAGATGGGAAGAGATTTGGA 1212
Query 1140 GCTGGCTCGCCTCAAGAAGTTGGCTAAAGAGGAACGTGACCACAAGGAAGTTGCCAAGCC 1199
||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||
Sbjct 1213 GCTTGCTCGCCTCAAGAAGCTGGCTAAAGAGGAGCGTGACCACAAAGAAGTTGACAAGCC 1272
Query 1200 TGTCGACCAAATCTTCGCTTAGAATCTTTGT-TTCTCGCTTACTTGTTGTGTTGGTTCCT 1258
||||||||||||||||||||||||||||||| |||| ||||||||||||| | | | |
Sbjct 1273 TGTCGACCAAATCTTCGCTTAGAATCTTTGTGTTCTTGCTTACTTGTTGT-T-G---CGT 1327
Query 1259 TCCGGTTCTGTTTTGTACGTTGGTACTGAAAATTATGCTAAGCTCGGTGTGTTTTGTGTT 1318
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1328 T--GGTTCTGTTTTGTACGTTGGTACTGAAAATTATGCTAGGCTCGGTGTGTTTTGTGTT 1385
Query 1319 TCTTTATTTTCGTTCTAATCATATAGAAATAATGATAATTGATGCACTTGTCTATGACAA 1378
| ||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1386 TATTTATGTTCTTTCGAATCATAAAGAAATAATGATAATTGATGCACTTGTCTATGACAA 1445
Query 1379 AAACATCATACTTCACCTGTATTTGACGCGTTGGGTTTATGTCAAAA-GCATTAATACAT 1437
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1446 AAACATCATACTCCACCTGTATTTGACGCGTTGGGTTTATGTCAAAAAGCATTAATACTT 1505
Query 1438 CAA 1440
|||
Sbjct 1506 CAA 1508
> AT3G51238.1 | Symbols: | other RNA | chr3:19025110-19026779
REVERSE LENGTH=1670
Length=1670
Score = 784 bits (424), Expect = 0.0
Identities = 479/506 (95%), Gaps = 1/506 (0%)
Strand=Plus/Minus
Query 1 GTGGTAGGTAGCTAGCGACCTCTTCGTTCTTCAGTCATCACAAGCTTTGAAAGGTTTTCA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1516 GTGGTAGGTAGCTAGCGACCTCTTCGTTCGTCAGTCATCACAAGCTTTGAAAGATTTTCA 1457
Query 61 GCTACCACTCTCTTC-TTATATATTCATTACACATCTCTTCTCTCTATCTGTCCCTTAAT 119
||||||||||||| | |||||||||||||||||||||||||| ||||| | || ||||||
Sbjct 1456 GCTACCACTCTCTCCTTTATATATTCATTACACATCTCTTCTTTCTATATCTCTCTTAAT 1397
Query 120 TTAGTCCTTTGTTTTTGTAATTACAATGGCTCCAGGAACTTTGACTGAGCTCGCCGGAGA 179
|||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1396 TTAGTCTTTTGTCTTCGTAATTACAATGGCTCCAGGAACTTTGACTGAGCTAGCCGGAGA 1337
Query 180 GTCTAAGCTCAACTCTAAATTCGTCCGGGACGAGGACGAACGCCCCAAAGTCGCTTACAA 239
||||||||||||||||||||| ||| ||||||| || ||||| |||||||||||||||||
Sbjct 1336 GTCTAAGCTCAACTCTAAATTTGTCAGGGACGAAGATGAACGGCCCAAAGTCGCTTACAA 1277
Query 240 TGAGTTTAGCGACGAAATCCCGGTGATCTCTCTCGCCGGTATCGATGATGTCGATGGAAA 299
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1276 TGTGTTTAGCGACGAAATCCCGGTGATCTCTCTCGCCGGTATCGATGACGTCGATGGAAA 1217
Query 300 AAGAGGAGAGATCTGCCGTCAGATCGTGGAGGCTTGTGAGAATTGGGGCATCTTCCAAGT 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1216 AAGAGGAGAGATCTGCCGTCAGATCGTTGAGGCTTGTGAGAATTGGGGCATCTTCCAAGT 1157
Query 360 GGTCGATCACGGCGTCGATACTAACTTGGTAGCGGATATGACTCGTCTCGCTCGTGACTT 419
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1156 GGTCGATCACGGCGTCGATACTAACTTAGTGGCGGATATGACTCGTCTCGCTCGTGACTT 1097
Query 420 CTTCGCTTTACCTCCGGAGGAAAAGCTCCGTTTCGACATGTCCGGTGGTAAAAAAGGAGG 479
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1096 CTTTGCTTTACCTCCGGAAGACAAGCTCCGTTTCGACATGTCCGGTGGTAAAAAAGGAGG 1037
Query 480 GTTCATTGTCTCTAGTCACCTCCAGG 505
||||| |||||||||||||||||||
Sbjct 1036 ATTCATCGTCTCTAGTCACCTCCAGG 1011
Score = 710 bits (384), Expect = 0.0
Identities = 416/432 (96%), Gaps = 0/432 (0%)
Strand=Plus/Minus
Query 502 CAGGGAGAGGCTGTGCAAGATTGGAGAGAGATAGTGACGTATTTCTCGTATCCGGTGAGA 561
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 924 CAGGGAGAGGCTGTGCAAGATTGGAGAGAGATTGTAACGTATTTCTCGTACCCGGTGAGA 865
Query 562 AACAGAGACTTCTCACGGTGGCCAGATAAGCCGGAAGGATGGGTGAAAGTGACGGAGGAG 621
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 864 AACAGAGACTACTCACGGTGGCCAGATAAGCCGGAAGGTTGGGTGAAAGTGACGGAGGAG 805
Query 622 TATAGTGAGAGGCTTATGAGTTTGGCTTGTAAGCTTCTTGAGGTTTTGTCTGAAGCTATG 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TATAGTGAGAGGCTTATGAGTTTGGCTTGTAAGCTTCTTGAGGTTTTGTCTGAAGCTATG 745
Query 682 GGTCTTGAGAAAGAGTCTCTTACCAATGCATGCGTCGATATGGACCAAAAGATTGTTGTT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GGTCTTGAGAAAGAGTCTCTTACCAATGCATGCGTCGATATGGACCAAAAGATTGTTGTT 685
Query 742 AATTATTATCCAAAATGCCCTCAGCCTGACCTTACTCTCGGACTCAAGCGTCACACTGAC 801
|||||||| |||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 684 AATTATTACCCAAAATGCCCTCAGCCTGATCTCACCCTCGGACTCAAGCGTCACACTGAC 625
Query 802 CCTGGAACCATTACTTTGCTGCTCCAAGACCAAGTCGGTGGACTACAAGCCACACGTGAC 861
|||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 624 CCTGGAACCATTACCTTGCTGCTACAAGACCAAGTCGGTGGATTACAAGCCACACGTGAC 565
Query 862 AATGGCAAGACGTGGATTACGGTCCAGCCTGTTGAAGGAGCGTTTGTAGTCAATCTCGGC 921
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 564 AATGGCAAGACATGGATTACGGTTCAGCCTGTTGAAGGAGCGTTTGTCGTCAATCTCGGC 505
Query 922 GACCACGGTCAT 933
|||||||| |||
Sbjct 504 GACCACGGCCAT 493
Score = 551 bits (298), Expect = 7e-156
Identities = 379/417 (91%), Gaps = 9/417 (2%)
Strand=Plus/Minus
Query 933 TTTTCTGAGCAATGGGAGGTTCAAGAATGCTGATCATCAGGCGGTGGTGAACTCAAACTC 992
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 409 TTTT-TGAGCAATGGGAGGTTCAAGAATGCTGATCATCAGGCCGTGGTGAACTCTAACTC 351
Query 993 GAGTAGACTATCCATAGCTACGTTCCAGAATCCGGCCCCCGATGCCACCGTGTATCCACT 1052
||| ||| |||||||||| ||||||||||| || || || |||||||| |||||||||||
Sbjct 350 GAGCAGATTATCCATAGCCACGTTCCAGAACCCCGCGCCGGATGCCACAGTGTATCCACT 291
Query 1053 TAAAGTAAGAGAAGGAGAGAAGCCGATCTTGGAGGAGCCAATCACGTTTGCTGAGATGTA 1112
||||||||||||||||||||| | || ||||||||||||||||||||||| ||||||||
Sbjct 290 GAAAGTAAGAGAAGGAGAGAAGGCAATATTGGAGGAGCCAATCACGTTTGCCGAGATGTA 231
Query 1113 TAAGAGAAAGATGGGAAGAGATCTGGAGCTGGCTCGCCTCAAGAAGTTGGCTAAAGAGGA 1172
|||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||
Sbjct 230 TAAGAGAAAGATGGGAAGAGATTTGGAGCTTGCTCGCCTCAAGAAGCTGGCTAAAGAGGA 171
Query 1173 ACGTGACCACAAGGAAGTTGCCAAGCCTGTCGACCAAATCTTCGCTTAGAATCTTTGT-T 1231
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 170 GCGTGACCACAAAGAAGTTGACAAGCCTGTCGACCAAATCTTCGCTTAGAATCTTTGTGT 111
Query 1232 TCTCGCTTACTTGTTGTGTTGGTTCCTTCCGGTTCTGTTTTGTACGTTGGTACTGAAAAT 1291
||| ||||||||| | |||| | | || ||||||||||||||||||||||||||||||
Sbjct 110 TCTTGCTTACTTG-T-TGTT-G--CGTT--GGTTCTGTTTTGTACGTTGGTACTGAAAAT 58
Query 1292 TATGCTAAGCTCGGTGTGTTTTGTGTTTCTTTATTTTCGTTCTAATCATATAGAAAT 1348
||||||| |||||||||||||||||||| ||||| ||| ||| ||||||| ||||||
Sbjct 57 TATGCTAGGCTCGGTGTGTTTTGTGTTTATTTATGTTCTTTCGAATCATAAAGAAAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5