BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485482 Length=2579 Score E Sequences producing significant alignments: (Bits) Value AT3G51310.1 | Symbols: VPS35C | VPS35 homolog C | chr3:19044480... 4115 0.0 > AT3G51310.1 | Symbols: VPS35C | VPS35 homolog C | chr3:19044480-19049382 REVERSE LENGTH=2588 Length=2588 Score = 4115 bits (2228), Expect = 0.0 Identities = 2478/2596 (95%), Gaps = 28/2596 (1%) Strand=Plus/Plus Query 1 GAAAATTCGGTCAAAATTGAGACTT-TCTCTGTAGAGTAAAGTAGTGA-GAA-ACAGAAT 57 ||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||||| Sbjct 4 GAAAATTCGGTCAAAATTGAGACTTCTCTCTGTAGAGTAAAGTAGTGAGGAACATAGAAT 63 Query 58 GATCGCCGACGACGATGAGAAGTGGCTTTCCGCCGCCATCGCCGCCGTTAAGCAAAATGC 117 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 64 GATCGCCGACGACGATGAGAAGTGGCTTGCCGCCGCAATCGCCGCCGTTAAGCAAAATGC 123 Query 118 TTTCTATATGCAGCGCGCTATCGACTCCAACAATCTGAAAGACGCTCTAAAGTTTTCTGC 177 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 124 TTTCTATATGCAGCGCGCTATCGACTCCAACAATCTCAAAGACGCTCTAAAGTTTTCTGC 183 Query 178 TCAAATGCTCAGCGAGCTTCGTACTTCCAAGCTTTCTCCTCATAAATACTATGAACTCTA 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 TCAAATGCTCAGCGAGCTTCGTACTTCCAAGCTTTCTCCTCATAAATACTATGAACTCTA 243 Query 238 TATTCGAGTTTTTAATGAACTGGGGACTTTGGAGATATTCTTCAAGGAAGAGACAGGG-C 296 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | Sbjct 244 TATGCGAGTTTTTAATGAATTGGGGACTTTGGAGATATTCTTCAAGGAAGAGAC-GGGAC 302 Query 297 GCGGTTGCTCCATTGCGGAGCTTTACGAGTTAGTGCAGCATGCCGGTAACATTTTGCCAA 356 | ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 303 GTGGTTGCTCCATCGCAGAGCTCTACGAGTTAGTTCAGCATGCCGGTAACATTTTGCCAA 362 Query 357 GATTGTATCTTCTCTGTACCATAGGATCTGTATATATCAAATCCAAGGACGTTACTGCTA 416 ||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 363 GATTGTATCTTTTATGTACCATAGGATCTGTATATATCAAATCCAAGGATGTTACTGCTA 422 Query 417 CGGATATACTTAAGGATCTTGTTGAAATGTGTCGAGCTGTTCAACATCCTTTACGTGGTC 476 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 423 CGGATATACTTAAGGATCTTGTTGAAATGTGTCGAGCTGTTCAACATCCCTTGCGTGGTC 482 Query 477 TTTTCTTGCGAAGTTATCTTGCTCAAGTTACTAGGGATAAGTTACCCAGCATTGGTTCTG 536 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 TTTTCTTGAGAAGTTATCTTGCTCAAGTTACTAGGGATAAGTTACCCAGCATTGGTTCTG 542 Query 537 ACTTGGATGGAGATGGTGATGCACACATGAATGCTTTAGAGTTCGTGCTTCAAAATTTTA 596 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 ACTTGGAAGGAGATGGTGATGCACACATGAATGCTTTAGAGTTCGTGCTTCAAAATTTTA 602 Query 597 CCGAGATGAACAAATTATGGGTTCGAATGCAACATCAGGGACCTAGTCGGGAGAAGGACA 656 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 603 CCGAGATGAACAAATTATGGGTTCGAATGCAACATCAGGGACCTAGTCGGGAGAAAGAAA 662 Query 657 AACGGGAGAAAGAAAGGAATGAACTACGTGATCTTGTTGGGAAGAACCTTCATGTACTGA 716 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 663 AACGTGAGAAAGAAAGGAATGAACTACGTGATCTTGTTGGTAAGAACCTTCATGTACTGA 722 Query 717 GTCAGTTGGAAGGTGTTGACCTTGGAATCTACAGAGATACTGTTCTTCCTAGAATACTGG 776 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 723 GTCAGTTAGAAGGTGTTGACCTTGGAATCTACAGAGATACTGTTCTTCCTAGAATACTGG 782 Query 777 AGCAGGTTGTCAACTGTAAGGATGAACTTGCACAGTGCTACCTAATGGATTGCATTATTC 836 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 783 AGCAGGTTGTCAACTGTAAGGATGAACTTGCACAGTGCTACCTTATGGATTGCATTATTC 842 Query 837 AAGTCTTTCCTGATGATTTCCACCTTCAAACTCTCGATGTATTATTGGGTGCTTGTCCAC 896 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 843 AAGTCTTTCCTGATGATTTTCACCTTCAAACTCTCGATGTATTATTGGGAGCTTGTCCAC 902 Query 897 AACTTCAGCCATCTGTTGATATCAAGACGGTCCTTTCGGGTCTAATGGAAAGGCTTTCGA 956 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 903 AACTTCAGCCGTCTGTTGATATCAAGACGGTTCTTTCGGGTCTAATGGAAAGGCTTTCGA 962 Query 957 ACTATGCTGCATCCAGTGTGGAAGCGTTGCCTAATTTCCTGCAAGTAGAAGCCTTTTCAA 1016 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 963 ACTATGCTGCATCCAGTGTGGAAGCATTGCCTAATTTCCTGCAAGTAGAAGCCTTTTCAA 1022 Query 1017 AGTTAAATTATGCCATTGGGAAGGTTGTAGAAGCACAGGTGGACTTGCCGGCCGCAGCAT 1076 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1023 AGTTAAATTATGCCATTGGGAAGGTTGTAGAAGCACAGGCGGACTTGCCGGCCGCAGCAT 1082 Query 1077 CTGTAACATTGTATTTGTTTCTTCTGAAATTCACTCTCCATGTCTATTCCGATCGTTTGG 1136 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 1083 CTGTAACATTGTATTTGTTTCTTCTAAAATTCACTCTCCATGTCTATTCCGATCGTCTGG 1142 Query 1137 ACTATGTAGACGAAGTTTTGGGATCTTGTGTTACTCAACTATCGGCCACAGGAAAGCTTT 1196 ||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 1143 ACTATGTGGACCAAGTTTTGGGATCATGTGTTACTCAACTATCTGCCACAGGAAAGCTTT 1202 Query 1197 GTGATGACAAGGCAGCAAAACAGATCGTCGCATTTCTTAGCGCTCCGTTGGAAAAGTATA 1256 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1203 GTGATGACAAGGCAGCAAAACAGATCGTCGCATTTCTTAGCGCTCCATTGGAAAAGTATA 1262 Query 1257 ATAATGTTGTAACTATCTTGAAGCTCACAAACTATCCTCGAGTAATGGAATACCTTGACC 1316 ||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||| Sbjct 1263 ATAATGTAGTAACTATCTTGAAGCTTACCAACTATCCTCTAGTAATGGAATACCTTGACC 1322 Query 1317 ATGAGACAAACAAAGCAATGGCAATCATTATAGTTCAGAGCATTTTGAAAAACAATACTC 1376 |||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||| Sbjct 1323 GTGAGACAAACAAAGCAATGGCAATCATTCTAGTTCAGAGCGTTTTTAAAAATAATACTC 1382 Query 1377 ATATTGCTACTGCTGATGAGGTCGATTCATTGTTTGAACTGGCAAAGGGTCTCATCAAGG 1436 | |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1383 ACATTGCTACTGCTGATGAGGTCGATGCATTGTTTGAACTGGCAAAGGGTCTCATGAAGG 1442 Query 1437 ATTTTGACGGAA-AAGTTGATGATGAGATTGATGAAGAAGATTTCCAGGAAGAGCAGAAC 1495 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1443 ATTTTGACGGAACAA-TTGATGATGAGATTGATGAAGAAGATTTCCAGGAAGAGCAGAAC 1501 Query 1496 CTTGTTGCACGGCTTGTTCACAAGCTCTACAATGATGATCCAGAAGAAATGTATAAGATT 1555 |||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||| Sbjct 1502 CTTGTTGCACGGCTTGTTAACAAGCTCTACATTGATGATCCAGAAGAAATGTCTAAGATT 1561 Query 1556 ATTTTCACAGTAAGGAAGCACATCCTGGCTGGAGGACCTAAGCGTATGCCTTTAACTATA 1615 |||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1562 ATTTTCACTGTAAGGAAGCACATCGTGGCTGGAGGACCTAAGCGTTTGCCTTTAACTATA 1621 Query 1616 CCACCCCTTGTCTTTTCCGCTCTCAAGTTAATTCGGCGACTGAGAGGTGGAGATGAAAAC 1675 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 1622 CCACCCCTTGTCTTTTCCGCGCTCAAGTTAATTCGGCGACTGCGAGGTGGAGATGAAAAC 1681 Query 1676 CCATTTGGAGATGATGCATCAGCAACACCGAAGAGAATTCTACAGCTTTTAAGTGAGGCA 1735 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | Sbjct 1682 CCATTTGGAGATGATGCATCAGCAACACCGAAGAGAATTCTACAGCTGTTAAGCGAGAC- 1740 Query 1736 AGTACCGTGGAAGTTCTATCTGATGTTTCCGCACCTGATTTGGCATTGCGCCTCTACTTG 1795 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1741 -G----GTGGAAGTTCTATCTGATGTTTCCGCACCTGATTTGGCATTGCGCCTCTACTTG 1795 Query 1796 CAGTGTGCTCAGGCAGCAAATGACTGTGAGTTAGAAACAGTCACTTATGAGTTCTTCACA 1855 ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 1796 CAGTGTGCTCAGGCAGCAAATAACTGTGAGTTAGAAACAGTTGCTTATGAGTTCTTCACA 1855 Query 1856 AAGGCATATCTTCTGTATGAAGAAGAAATTTCAGATTCAAAGGCACAAGTAACAGCACTA 1915 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1856 AAGGCATATCTTCTGTATGAAGAAGAAATTTCAGATTCAAAGGCACAAGTAACAGCACTA 1915 Query 1916 CGTTTAATAATAGGGACACTCCAGCGGATGCGTGTATTTAATGTTGAGAACAGAGATACT 1975 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1916 CGTTTAATAATAGGGACACTCCAGAGGATGCGTGTATTTAATGTTGAGAACAGAGATACT 1975 Query 1976 CTGACTCACAAGGCGACAGGGTACTCTGCAAGACTCCTTAGGAAGCCAGATCAGTGTAGG 2035 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1976 CTGACTCACAAGGCGACAGGGTATTCTGCAAGACTCCTAAGGAAGCCAGATCAGTGTAGA 2035 Query 2036 GCTGTTTATGAGTGTGCGCATCTCTTCTGGGCTGACGAATGCGAGAACCTAAAAGATGGA 2095 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2036 GCTGTTTATGAATGTGCGCATCTCTTCTGGGCTGACGAATGCGAGAACCTGAAAGATGGA 2095 Query 2096 GAGAGGGTTGTGCTTTGTCTGAAGAGGGCACAAAGAATTGCAGATGCTGTTCAACAAATG 2155 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 2096 GAGAGGGTTGTGCTTTGCCTGAAGAGGGCACAAAGGATTGCAGATGCTGTTCAACAAATG 2155 Query 2156 GCCAATGCATCCCGTGGTACCAGTAGCACTGGGTCGGTGGCTCTATATGTCGAACTGCTG 2215 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2156 GCCAACGCATCCCGTGGTACCAGTAGCACTGGGTCGGTGTCTCTATATGTCGAACTGCTG 2215 Query 2216 AACAAGTATCTCTACTTCTTGGAGAAAGGAAACCCACAATTAACAGGCGATACAATCCAG 2275 |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| || Sbjct 2216 AACAAGTATCTCTACTTCCTGGAGAAAGGAAACCAACAAGTAACAGGCGATACAATCAAG 2275 Query 2276 AGCTTAGCTGAATTAATCAGAAGCGAGACGAAGAAGGTTGAGTCAG----AG--CCGTTC 2329 ||||||||||||||||||| ||||||||| |||||||||||||||| || || ||| Sbjct 2276 AGCTTAGCTGAATTAATCAAAAGCGAGACAAAGAAGGTTGAGTCAGGCGCAGAGCCATTC 2335 Query 2330 ATAAATAGCACTCTGCGTTACATCGAGTTTCAGAGACAGCAAGA---TGG---CATGGAT 2383 |||||||| ||||| ||||||||||||||||||||||||||||| ||| |||| || Sbjct 2336 ATAAATAGTACTCTACGTTACATCGAGTTTCAGAGACAGCAAGAAGATGGTGGCATGAAT 2395 Query 2384 GAGAAATACGAGAAAATCAAAATGGAATGGTTTGAATGAATTTCTTTCTTGCATTCTTTT 2443 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 2396 GAGAAATACGAGAAAATCAAAATGGAATGGTTTGAATGAATTTATTTCTTGCATTCTGTT 2455 Query 2444 TGGCACATCATCAATAATCATATGGCTTCTCGTCTTGTTGCAGAAGCATGAAGAGTAACC 2503 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 2456 AGGCAAATCATCAATAATCA-ATGGCTTCTCGTCTTGTTGCAGAAGCATGAAGAGTAATC 2514 Query 2504 TTGAGAAATAAAACTTGTATCATTACTTTTCTTTTACTAGTTACACTCTCTCTACCAATA 2563 ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| Sbjct 2515 TTGAGAAATAAAACTTGTATCATTACTTTTCATTTCCTAGTTACACTCTCT--ACCAATA 2572 Query 2564 AACATGTTTGCAAAGT 2579 |||||||||||||||| Sbjct 2573 AACATGTTTGCAAAGT 2588 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 128026038536 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5