BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485488 Length=1799 Score E Sequences producing significant alignments: (Bits) Value AT3G51370.1 | Symbols: | Protein phosphatase 2C family protein... 2774 0.0 > AT3G51370.1 | Symbols: | Protein phosphatase 2C family protein | chr3:19069363-19072195 FORWARD LENGTH=1814 Length=1814 Score = 2774 bits (1502), Expect = 0.0 Identities = 1722/1823 (94%), Gaps = 36/1823 (2%) Strand=Plus/Plus Query 1 TCTGGTTAGAAGCAGTGGAGCcctttcctttctctcttctctcttttcct-ctttgcctt 59 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1 TCTGGTTAGAAGCAGTGGAGCCCTTTCCTTTCTCTCTTCTCTCTTTT-CTCCTTTGCCTT 59 Query 60 c-t--tctcCGAAGAGAAGGTCGACGCTACTTCTTC--CTT-CTTC---CTTCTGGATCT 110 | | |||||| |||||||||||||||||||||||| ||| |||| ||||||||||| Sbjct 60 CTTCCTCTCCG-AGAGAAGGTCGACGCTACTTCTTCTTCTTCCTTCTTTCTTCTGGATCT 118 Query 111 GATTCGGATCCATCACTCTCTCGTTCTCTACATCAA----TTTT-TCAGATCTTCATCtt 165 |||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||| Sbjct 119 GATTCGGATCCATCACTCTCTCTTTCTCTACATCAATTTGTTTTCTCAGATCTTCATCTT 178 Query 166 tttttCTTCTACCTGTATTTGTCGACCTTTTCTTCTCTTATCACTAAACTCTCAAATCCT 225 |||||| | ||||||||||||||||||||||| |||| |||||||||| |||||||||| Sbjct 179 TTTTTCGTATACCTGTATTTGTCGACCTTTTC-TCTC-AATCACTAAACCCTCAAATCCT 236 Query 226 TTGTTTTGGA-T-TGAGATTGC-T-TCTGATTGTAATTGATTTGTTGTGTATCTGTTGAC 281 || ||||||| | | ||||||| | |||||||||||||| |||| |||||||| |||||| Sbjct 237 TT-TTTTGGATTATAAGATTGCTTCTCTGATTGTAATTGCTTTGATGTGTATCAGTTGAC 295 Query 282 TTGTGAAAAGTCTGCGAGTGACTTCTTCTTGTTT--ACATCAGCTTCTGTTGAATCTCTT 339 |||||||||||||||||||||||||||| ||||| ||||||||| || ||||||| | Sbjct 296 TTGTGAAAAGTCTGCGAGTGACTTCTTCCTGTTTACACATCAGCTACTCCAGAATCTC-T 354 Query 340 GCAGATTCTTAAAAGCTTAAATCTTTGTTGCTACTTTGTTTGTTTCTGTGCATCCCTTTG 399 ||||||||||||||||||||||||| || | |||||| ||||||||||||||| ||||| Sbjct 355 -CAGATTCTTAAAAGCTTAAATCTTT-TTTCGACTTTGATTGTTTCTGTGCATCGCTTTG 412 Query 400 ACGGATGTGGAGGaaaaaaaGGGTTGTCTTGATGAAATGAGGGATGTTATCAACGTTAAT 459 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 413 ACGGATGTGGAGG-AAAAAAGGGGTGTCTTGATGAAATGAGGGATGTTATCAACGTTAAT 471 Query 460 GAAACTCTTGAGTGCTTGTCTGTGGCCGTCTTCTTCCTCGGGCAAGTCCTCTGAATCAAC 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 472 GAAACTCTTGAGTGCTTGTCTGTGGCCGTCTTCTTCCTCGGGCAAGTCCTCTGATTCAAC 531 Query 520 AGGAAAACAAGATGGATTGCTTTGGTACAAAGACTCTGGTCAGCACCTCGTTGGTGAATT 579 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 532 TGGAAAACAAGATGGATTGCTTTGGTACAAAGACTTTGGTCAGCACCTCGTTGGTGAATT 591 Query 580 CTCCATGGCTGTTGTTCAAGCCAATAACTTGCTTGAGGATCAGAGTCAAGTCGAGTCTGG 639 |||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| Sbjct 592 CTCCATGGCTGTTGTTCAAGCCAACAACTTGCTTGAGGATCAGAGCCAAGTTGAGTCTGG 651 Query 640 TCCTTTGAGTACTCTTGACTCTGGTCCTTATGGAACCTTTGTTGGTGTATATGACGGCCA 699 ||||||||||||||||||||||||||||||||||| ||| |||| | ||||| ||||| Sbjct 652 GCCTTTGAGTACTCTTGACTCTGGTCCTTATGGAACTTTTATTGGAATCTATGATGGCCA 711 Query 700 TGGTGGCCCTGAGACCTCACGATTTGTTAATGATCACCTTTTTCAGCATCTAAAGAGATT 759 ||| || |||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 712 TGGCGGGCCTGAGACGTCGCGATTTGTTAATGATCACCTTTTTCAGCATCTAAAGAGATT 771 Query 760 CGCTGCAGAGGAGGCCTCTATGTCGGTGGATGTAATTAAAAAGGCGTATGAGGCGACAGA 819 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 TGCTGCAGAGCAGGCCTCTATGTCGGTGGATGTAATTAAAAAGGCGTATGAGGCGACAGA 831 Query 820 AGAAGGTTTTTTAGGGGTTGTGACAAAGCAGTGGCCAACTAAGCCACTGATTGCAGCGGT 879 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 832 AGAAGGTTTTTTAGGGGTTGTGACAAAGCAGTGGCCAACTAAGCCACAGATTGCAGCGGT 891 Query 880 TGGGTCTTGCTGCTTGGTGGGTGTTATATGCGGAGGGATGCTTTACATAGCTAATGTTGG 939 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 TGGGTCTTGCTGCTTGGTGGGTGTTATATGCGGAGGGATGCTTTACATAGCTAATGTTGG 951 Query 940 GGATTCCCGTGCAGTTCTTGGAAGGGCTATGAAGGCGACAGGTGAGGTTATTGCGCTTCA 999 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 952 GGATTCCCGTGCAGTTCTTGGAAGGGCTATGAAGGCGACAGGTGAGGTTATTGCCCTTCA 1011 Query 1000 GCTCTCCGCAGAACATAATGTGAGCATAGAGTCTGTTAGACAGGAGATGCACTCCTTGCA 1059 |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1012 GCTCTCTGCTGAACATAATGTGAGTATAGAGTCTGTTAGACAGGAGATGCACTCCTTGCA 1071 Query 1060 TCCAGATGACTCGCATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGACTTAT 1119 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1072 CCCAGATGACTCGCATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTAT 1131 Query 1120 TCAGGTATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCGGAGTTCAACAAGGAACC 1179 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1132 TCAGATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTCAACAAGGAACC 1191 Query 1180 ATTGTACACAAAGTATAGAATCCGTGAACCGTTCAAAAGACCGATCTTGAGTGGGGAACC 1239 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1192 ATTGTACACAAAGTATAGAATCCGTGAACCGTTCAAAAGACCTATCTTGAGTGGGGAACC 1251 Query 1240 AACGATAACGGAGCATGAGATCCAACCACAAGATCAGTTTCTAATATTCGCTTCTGATGG 1299 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1252 AACGATAACGGAGCATGAGATCCAACCACAAGATAAGTTTCTAATATTCGCTTCTGATGG 1311 Query 1300 ACTATGGGAACAGCTGAGCAACCAAGAAGCCGTTGACATCGTTCAGAACCACCCACGAAA 1359 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1312 ACTATGGGAACAGATGAGCAACCAAGAAGCTGTTGACATCGTTCAGAACCACCCACGAAA 1371 Query 1360 TGGGATTGCACGGAGACTGGTGAAGATGGCACTGCAAGAGGCGGCAAAGAAACGAGAGAT 1419 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1372 CGGGATTGCACGGAGACTGGTGAAGATGGCACTGCAAGAGGCGGCAAAGAAACGAGAGAT 1431 Query 1420 GAGATACTCTGATCTGAAGAAGATAGAGAGAGGAGTGAGAAGGCATTTCCACGATGACAT 1479 |||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||||| Sbjct 1432 GAGATATTCTGATCTAAAGAAGATAGAGAGAGGTGTGAGGAGACATTTCCACGATGACAT 1491 Query 1480 AACTGTGGT-AGTCATCTTCCTTGATACCAATCAGGTGAGCTCTGTGAAAGGACCCTCTC 1538 ||||||||| | | |||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1492 AACTGTGGTCA-TAATCTTCCTTGATACCAATCAGGTGAGCTCTGTGAAAGGACCCCCAC 1550 Query 1539 TCTCTATCCGAGGCGGTGGTATGACATTCCCCAAGAAAATCTAAGATACTCCACTTTTAG 1598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1551 TCTCTATCCGAGGCGGTGGTATGACATTCCCCAAGAAAATCTAAGATACTCCACTTTTAG 1610 Query 1599 GCTCCCATCTTTTGTAGTTATATaaaaaaaaG-GTCACTCGT-GTTGGTATAAGAATGTA 1656 ||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||| Sbjct 1611 GCTCC-ATCTTTTGTAGTTATATAAAAAAAAAAGTCACT-GTTGTTGGTATAAGAATGTA 1668 Query 1657 TAATTTTAACGTGAAAGCCACACACCACTGACGTTTGGAACTCATTCCAGTAATTATTAA 1716 |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1669 TAATTTTAACGTGAAAGCCACACAATACTGATGTTTGGAACTCATTCCAGTAATTATTAA 1728 Query 1717 TTTTTATTTATTCAGCAAACTTTGTGTAACGATGTAATTTGTTGTTGATGATGAATGGAT 1776 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1729 TTTTTATTTATTCAGCAAACTTTGTGTAACGATGTAATTTGTTGTTGATGATGAATGAAT 1788 Query 1777 ATGAATGTAGGCCTTCTTCTTCT 1799 ||||||||||||||||||||||| Sbjct 1789 ATGAATGTAGGCCTTCTTCTTCT 1811 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89005566285 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5