BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485512
Length=716
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51600.1 | Symbols: LTP5 | lipid transfer protein 5 | chr3:1... 900 0.0
> AT3G51600.1 | Symbols: LTP5 | lipid transfer protein 5 | chr3:19138394-19139252
REVERSE LENGTH=752
Length=752
Score = 900 bits (487), Expect = 0.0
Identities = 649/721 (90%), Gaps = 36/721 (5%)
Strand=Plus/Plus
Query 1 ACCTTCTACTTTCATGCATTTGGGCTC-TTCGCTCTCTCTATATAAAACCCAACCTTCAT 59
|||||||||||||||||||||| ||| | ||||||||||||| |||||||||||||||
Sbjct 1 ACCTTCTACTTTCATGCATTTGCACTCATAAGCTCTCTCTATAT-AAACCCAACCTTCAT 59
Query 60 TACCA---TT-A--AT-C-AT-C-ATCCA--A--T-C-CA--AAAAAGAG-AAACAAAAA 100
||||| || | || | || | ||||| | | | | |||||||| ||| |||||
Sbjct 60 TACCATTCTTCATTATCCAATCCAATCCATTACTTACTAAGTAAAAAGAGAAAAAAAAAA 119
Query 101 GTTTAAAGATATGGAGGGACTCTTGAAGTTGTCAACGTTGGTGATTGTGTGCATGTTAGT 160
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 AATT-AAGATATGGAGGGACTCTTGAAGTTGTCAACTTTGGTGATTGTGTGCATGTTAGT 178
Query 161 GACCGCTCCAATGGCGTCCGAGGCAGCCATCTCATGCGGCGCAGTCACCGGCAGCTTGGG 220
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 179 GACCGCTCCAATGGCGTCCGAGGCAGCAATCTCGTGCGGCGCAGTCACCGGCAGCTTAGG 238
Query 221 TCAATGCTATAACTACTTGATCCGAGGCGGTTTCATTCCTCGAGGGTGTTGCTCTGGCGT 280
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 239 TCAATGCTATAACTACTTGACCCGAGGCGGTTTCATTCCTAGAGGGTGTTGCTCTGGCGT 298
Query 281 TCAGAGGCTCCACAGCATGGCTCGTACCACCCGTGACCGACAACAAGCTTGTCGTTGTAT 340
|||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 299 TCAGAGGCTCAACAGCTTGGCTCGTACCACCCGTGACCGCCAACAAGCTTGTCGTTGTAT 358
Query 341 CCAGGGAGCAGCTAGAGCCTTGGGTTCTCGACTTAACGCTGGTCGTGCTGCTCGTCTCCC 400
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCAGGGAGCAGCGAGAGCCTTGGGTTCTCGACTTAACGCTGGTCGTGCTGCTCGTCTCCC 418
Query 401 CGGTGCTTGCCGTGTTAGGATCTCTTACCCCATCAGTGCCAGAACTAACTGTAACACCGT 460
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 419 TGGTGCTTGCCGTGTTAGGATCTCTTACCCCATCAGTGCCAGAACCAACTGTAACACCGT 478
Query 461 GAGGTGATCAAGAGGTGATAGACGCTGAAGGGTTTTCATATAATCGATGAGAGAGTATTA 520
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 CAGGTGATCAAAAGAAGATAGACGTTGAAGGGTTTTCATATAATCGATGAGAGAGTATTA 538
Query 521 AAATATAATTAAGATGTCAC--TATATA-AGAGTA-T--ATCCTTTTTACTGTTATTGTT 574
||| |||||||||||||||| |||||| | | || | |||||||| ||||||||| ||
Sbjct 539 AAA-ATAATTAAGATGTCACACTATATACACACTAGTGTATCCTTTT-ACTGTTATTATT 596
Query 575 GCTGTGTTT-TAGAATTTGTGTTTTCATGCCTTTCTTTATATATGACGACGGTCCATTTA 633
| ||||||| |||| |||||||||||||| |||||||| ||||||||| | ||||||||
Sbjct 597 GTTGTGTTTCTAGATTTTGTGTTTTCATGTCTTTCTTTGTATATGACG--G-TCCATTTA 653
Query 634 ATTGGTCGTCTGTGTTGTGTACTCCTCTAATGATATATGGAATT-ACGATATATATAGTA 692
|||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| || ||
Sbjct 654 ATTGGTCGTCTGTGTTATGTACTCCTCTAATGATATATTGAATTTACGAT-TATGTATTA 712
Query 693 T 693
|
Sbjct 713 T 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34711795577
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5