BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485520
Length=626
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51660.1 | Symbols: | Tautomerase/MIF superfamily protein |... 819 0.0
> AT3G51660.1 | Symbols: | Tautomerase/MIF superfamily protein
| chr3:19164063-19165247 REVERSE LENGTH=676
Length=676
Score = 819 bits (443), Expect = 0.0
Identities = 568/622 (91%), Gaps = 34/622 (5%)
Strand=Plus/Plus
Query 23 GAGATCTTCTCTTCCACAACTTCCAAACTCCATATAAAT--CCTCTCTTTTGGTTTCTTG 80
|||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||
Sbjct 63 GAGATCTTCTCTTCCACAACTTCCAAACACCATTTAAATCCCCTCTCATTTGGTTTCTTG 122
Query 81 AGATTCTTGGC-AAC-AAGCTTAA----CG---G-----ACGGTGAGAAAATGCCTTGTC 126
|||||||| || ||| |||||||| || | |||||||||||||||||||||
Sbjct 123 AGATTCTT-GCAAACAAAGCTTAACGGGCGTTAGTATTCACGGTGAGAAAATGCCTTGTC 181
Query 127 TTTACATTACAACCAACGTCAATTTTGACGGCGTTAACACCGATCCATTCTACTCGGAAG 186
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 182 TTTACATTACAACAAACGTCAATTTTGACGGCGTTAACACCGATCCGTTCTACTCCGAAG 241
Query 187 TCACCAAAGCCGTCGCTTCCATCGTCGGACGACCTCAGAACTTAGTGATGGTGGTGTTGA 246
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 242 TCACCAAAGCCGTCGCTTCCATCGTCGGACGACCTCAAAACTTAGTGATGGTGGTGTTGA 301
Query 247 AGGGATCAGTAGAGATAGTGTTTGGAGGGAACAAAGAAGCAGCTGCATATGCAGAGATTG 306
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AGGGATCAGTAGAGATAGTATTTGGAGGGAACAAAGAAGCAGCTGCATATGCAGAGATTG 361
Query 307 TGTCAATGGGAGGTATCACCAAACAAGTTAAGAGAGAACTTATCGCGACCGTTGGTTCTA 366
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 362 TGTCAATGGGAGGCATCACCAAACAAGTTAAGAGAGAACTCATAGCGACCGTTGGTTCTA 421
Query 367 TTCTTCACACTCATTTTTCTATTCATCCCACTCGTTTTATCTTTAAAGTTTTTGATATCA 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 422 TTCTTCACACTCATTTTTCTATTCATCCCACTCGTTTTATCTTTAAAGTTTTTGATATTA 481
Query 427 ATTCTTTACCTCTTCCTTCTAAACTGTAGTACTGTTATGATCTTTGTATTGTTCATCAAA 486
||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 482 ATTCTTTGCCTCTTCCTTCTAAACTTTAGT---GTTATGATCTTTGTATTGTTCATCAAA 538
Query 487 CACACATTATATATCATTCAAGTTAACCAACACATGtttttcttttctttatgagtcttc 546
|||| |||||||| || | | | |||||||| |||||||||||||||||||||
Sbjct 539 CACAAATTATATA-CA-----G--A-CT--CACATGTTATTCTTTTCTTTATGAGTCTTC 587
Query 547 tctatttttatgtttacaag-cttttaCTACTATATCATCATTCAAT-TAGATCTTGACC 604
||||||||||||||||||| ||||||||| |||||||||||||| | ||||||||||||
Sbjct 588 TCTATTTTTATGTTTACAAATCTTTTACTATTATATCATCATTCA-TGTAGATCTTGACC 646
Query 605 GTATAATCTTAATATAAAACTT 626
|||||||||||||||||||||
Sbjct 647 CTATAATCTTAATATAAAACTT 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30190722347
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5