BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485546
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
AT3G51890.1 | Symbols: | Clathrin light chain protein | chr3:1... 1182 0.0
> AT3G51890.1 | Symbols: | Clathrin light chain protein | chr3:19249480-19250974
REVERSE LENGTH=1067
Length=1067
Score = 1182 bits (640), Expect = 0.0
Identities = 821/901 (91%), Gaps = 41/901 (5%)
Strand=Plus/Plus
Query 8 ATGGTGGCGACGGAGGAAACTTCACGGTTTACGAGTCTCGATTCCAGTCGCAGCGGTTTG 67
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 149 ATGGCGGCGACGGAGGAAACTTCACGGCTTACGAGTCTCGATTCCAGTCGCAGCGGTTTG 208
Query 68 ACTCGTCCTTCTCGAATTTTGACTCCCAACCAGAGAAAGAGTCAGACTTACCAGGCGACG 127
|||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||| ||
Sbjct 209 ACTCTTCCTTCTCTAATTTTGACTCCCAACCGGAGAAAGAGTCAGACTTACCATGCGGCG 268
Query 128 ATTCGTCTCCTCAATTAAACCAGAAGGAATTACCGGAAACTCAATCTCCGCCGTTGATAA 187
|||| ||| | | | | | ||| ||||||||||||||||||| |||||
Sbjct 269 ATTCATCT-C-C---T----C-----G----ACCCGAAACTCAATCTCCGCCGTCGATAA 310
Query 188 ACAGTTTAGATGATACGAACGGTTCGATCTTGCCTCCTCCATCGGCCATGGAGAAAGAGG 247
| ||||| |||||||| |||| |||||||||||| || ||||||||||||||||||||||
Sbjct 311 ATAGTTTCGATGATACAAACGATTCGATCTTGCCGCCACCATCGGCCATGGAGAAAGAGG 370
Query 248 AAGGTTTTGCTCTTAGGGAGTGGCGAAGGCTAAATGCTCTGAGATTGgaagagaaagaaa 307
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAGGTTTCGCTCTTAGAGAGTGGCGAAGGCTAAATGCTCTGAGATTGGAAGAGAAAGAAA 430
Query 308 aggaagagaaagaaaTGGTTCAACAAATTATAGAAGCAGCAGAGCAATACAAGGCTGAGT 367
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 431 AGGAAGAGAAAGAAATGGTTCAACAAATTCTAGAAGCAGCAGAGCAATATAAGGCTGAGT 490
Query 368 TCTATAGCAAGCGTAACGTTACTATTGAAAACAACAAGAAATTGAACCGCGAGAAAGAGA 427
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 491 TCTATAGCAAGCGTAACGTTACTATTGAAAACAACAAGAAACTAAACCGCGAGAAAGAGA 550
Query 428 AGTTGTTTTTGGAGAATCAAGAAAAGTTTTACGCTGAAGCGGACAAAAACAACTGGAAGG 487
|||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 551 AGTTTTTTTTGGAGAATCAAGAAAAGTTTTACGCTGAAGCTGACAAAAACAATTGGAAGG 610
Query 488 CGATTGCGGAACTCATTCCTCGTGAAGTACCAGTTATAGAGAATAGAGGGAATAAGAAGA 547
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 611 CGATTGCAGAACTCATTCCTCGTGAAGTGCCAGTTATAGAGAATAGAGGGAACAAGAAGA 670
Query 548 AAACAGCAACCATAACTGTGATCCAGGGACCAAAGCCAGGGAAGCCCACTGATCTGTCTC 607
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 671 AAACAGCAACCATAACTGTAATCCAGGGACCAAAGCCAGGGAAGCCCACTGATCTGTCTC 730
Query 608 GTATGCGTCAAGTGCTCACGAAGCTCAAGCACAATCCGCCAACTCATATGAAGCCAAAAT 667
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 731 GTATGCGTCAAGTGCTCACGAAACTCAAGCACAATCCGCCAACTCATATGAAGCCAAAAC 790
Query 668 TGCCCTCACCATCTGGAGCTGACCCGAATGTGAGTG--A---AA-AGGTCACAGATACAG 721
|||||||||||||||||||||||||||||||||||| | || ||||||||| |||||
Sbjct 791 TGCCCTCACCATCTGGAGCTGACCCGAATGTGAGTGTGAGTGAACAGGTCACAGTTACAG 850
Query 722 AGAAGTTGTAGTTTGTGTTTGTGACA-GTTTAACTTCTT-T--ATT--TGTTGAAAACCG 775
||||||||||||| |||| ||||||| ||| |||||||| | ||| |||| ||| |||
Sbjct 851 AGAAGTTGTAGTT-GTGTATGTGACAAGTT-AACTTCTTCTTGATTGATGTT-AAA-CCG 906
Query 776 TCTTTACTTTGTTAGCTTCCTTCATGTTCAGTCTCGAATTTTGTTTGTTTTGGTTTCATC 835
|||||||||||||||||||| |||||||||||||||| | |||||||||||| |||| ||
Sbjct 907 TCTTTACTTTGTTAGCTTCCCTCATGTTCAGTCTCGACTATTGTTTGTTTTGATTTCGTC 966
Query 836 TTTGGTCTTACCAATTACCATTGTTGGTTTCCCACACAGTTTTCAACTTTGATGTATATA 895
||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 967 TTTGGTCTTACCA-TT------GTTGGTTTCCCACACAGTTTTCTACTTTGATGTATATA 1019
Query 896 T 896
|
Sbjct 1020 T 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43753942037
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5